Microbulbifer celer: LPW13_02220
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Entry
LPW13_02220 CDS
T07789
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mcel
Microbulbifer celer
Pathway
mcel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPW13_02220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcel03019
]
LPW13_02220
03009 Ribosome biogenesis [BR:
mcel03009
]
LPW13_02220
Enzymes [BR:
mcel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPW13_02220
Messenger RNA biogenesis [BR:
mcel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPW13_02220
Ribosome biogenesis [BR:
mcel03009
]
Prokaryotic type
rRNA helicases
LPW13_02220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
PRD1_P5_spike_N
Motif
Other DBs
NCBI-ProteinID:
UFN57883
LinkDB
All DBs
Position
577940..579694
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AA seq
584 aa
AA seq
DB search
MTDNSAPAGFDQLGLPTQLLEAVTKLGYETPSPIQEKTIPSLLNGRDVLGQAQTGTGKTA
AFALPLLANLDLKSKRPQALVLAPTRELAIQVAEACQSYAANLKGFHVAPIYGGADYRGQ
IQQLKRGVQLVVGTPGRVMDHMRKGTLDLSGLKTLVLDEADEMLRMGFIDDVEWVLEQIP
DERQIALFSATMPKEIARIAREHLNDPVDVKIKVKTETADTIRQRYWPVGGLHKLDALTR
ILEAEPVDGTIIFVRTKNTTVELADKLAARGFASAALNGDMAQNLREQVIDKLKKGKLDI
VVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLR
VIERATKKPIERLELPTAKAVNASRMEKFRQRITETLDGREDLAPFRDLVDQYLSENEVD
PLDVAAALASMAQGDQPLLLDEREPKQRDFNDRGDRDFDDRKRNKRDKKGFDKQKHVGPP
DEGKERFRIEVGREHGVRPGSVVGAIANEVDLDSSHIGRIEIYPDYTTVDLPEGMPKEIF
NHLKKVRVNGRPMNIAKFTEQGGGGKGGKPPFAAKKRKPKKPRD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaactccgcacctgctggttttgaccagctgggcctgcctacgcaacttctc
gaagccgttaccaaactgggttacgaaaccccgtctcccatccaggaaaagaccatcccg
tcactgttgaacgggcgcgatgtactgggccaggcccagaccggtaccggtaaaaccgcc
gctttcgcattgcctttgctggcgaacctggatctgaaaagcaagcgtccccaggccctg
gtactggcacccacccgcgagctggccatccaggtggccgaggcttgccagtcttacgcg
gccaacctcaaaggtttccatgttgcgcccatctatggtggtgccgactaccgcggccag
atccagcagttgaagcgcggtgtgcaactggttgtgggcaccccgggccgggtgatggac
cacatgcgcaagggcaccctggacctgtccggcctgaaaaccctggtactcgacgaagcc
gacgaaatgctgcgcatgggctttatcgacgacgtggagtgggtactggaacagattccc
gatgagcgccagatcgcgctgttctccgccaccatgccgaaggaaatcgcccgcatcgcg
cgcgaacacctgaacgacccggtggacgtgaaaatcaaggtcaaaactgagaccgccgat
accatccgccagcgctactggccggtgggcggcctgcacaagctggacgcgctgacccgg
attctggaagcagagccggtggacggcaccatcatcttcgtgcgcaccaagaacaccacc
gtagagctggccgataagcttgccgcccgcggttttgccagtgctgccctgaacggtgat
atggcacagaacctgcgcgagcaggtgatcgacaagctgaaaaaaggcaaactggatatc
gtggtcgccaccgacgtggccgcccgcggtctggatgtgaagcgcatcagccacgtgatc
aactacgacattccctacgataccgaagcgtacatccaccgtatcggtcgaaccggccgc
gccggtcgcgaaggcgatgccatcctgttcgtagcgccccgtgagcgccgtatgctgcgc
gtgatcgagcgtgccaccaagaagccgatcgagcgtctggagttgcccaccgccaaggcc
gtgaatgcctcgcgcatggaaaaatttcgtcagcgtattaccgagacgctggatggtcgc
gaagacctggccccgttccgcgatctggtagaccagtatctgtcagaaaacgaagtggat
ccgttggacgtagccgccgcactggcctccatggcccagggcgaccagccgctactgctg
gacgagcgtgagccgaaacagcgcgacttcaatgaccgcggcgaccgcgactttgatgat
cgcaaacgcaacaagcgcgacaagaaaggcttcgataagcagaagcacgttggcccgccg
gacgaaggcaaagagcgcttccgtattgaagtaggccgcgaacacggcgtgcgtccgggt
agcgtcgtgggtgccatcgccaacgaagtggatctcgacagctcgcacattggccgtatc
gaaatctaccccgattacaccaccgtggacctgccggaaggcatgcccaaggaaattttc
aatcacctgaaaaaggtacgggtaaacggccgaccgatgaatattgccaagttcaccgag
caaggcggtggcggcaaaggcggcaagccgccgttcgccgcgaaaaagcgcaagccgaag
aaaccgcgcgactaa
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