Microbulbifer celer: LPW13_14400
Help
Entry
LPW13_14400 CDS
T07789
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mcel
Microbulbifer celer
Pathway
mcel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPW13_14400 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcel03019
]
LPW13_14400 (rnr)
03016 Transfer RNA biogenesis [BR:
mcel03016
]
LPW13_14400 (rnr)
Enzymes [BR:
mcel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPW13_14400 (rnr)
Messenger RNA biogenesis [BR:
mcel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPW13_14400 (rnr)
Transfer RNA biogenesis [BR:
mcel03016
]
Prokaryotic type
tRNA degradation factors
LPW13_14400 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
HTH_12
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
UFN56749
LinkDB
All DBs
Position
complement(3466606..3469503)
Genome browser
AA seq
965 aa
AA seq
DB search
MNQDKPNSTSNDSVGSGADPHAEREAEKYEKPVPSREFLLDLLEQQSEPVAWETVADLLS
IDDEDRREGVRRRLIAMSRDGQIASNRAGDFGVLDKMSLVRGRVIGHRDGFGFVSPGDGS
DDLFLSHRQMRKVFDGDEVLVRETPGGFRGKREGAVVRVLKHNTHELAGRLYREDGICFV
RPDNPRLTLDVMVPEDKSADAESGQYVVVKLTAQPGRNTLPHGEVTEVLGDHLAPGMEID
VAIRNYAIPHTWPAAVEAQAAEIASEVLEEDKKPRIDLRQLPLVTIDGEDARDFDDAVFC
EVLPDGNWKLLVAIADVSHYVQVGTPLDIEAHERGNSVYFPDFVVPMLPEKLSNGLCSLN
PEVDRLCMVCEMHIDEGGNIVDYQFFEGLMRSHARFTYTQVGEIVAERDDRNSGVRKQFA
ALTPHIDNLHDLYSALRSARDRRGAIDFETTETRIIFDAARKIERIVPVQRNDAHKMIEE
CMLAANVCAAEIMELAELPTLYRVHDTPKSERLEKLRDYLGELGLRLEGGSEPQPSDYQA
LLDQVEGRPDFHIIQTMLLRSMNQAVYQPENRGHFGLDYRAYAHFTSPIRRYPDLLLHRG
LRWLIRNGSANPPAVAEKVRQAPGAHAIDREAILPYGTGAMVELGEHCSMTERRADDATR
DVVSWLKCEYLQDHVGEIYRGVVSAVTGFGLFVELDDLYVEGLVHVTALPKDFYHFEQAQ
QRLVGERSGARYHLGDGVTVQVARVDLEERKVDFSFVELHPRPSYKNPKYRKPKADSKSK
TDTKPKTDTKSKAGKKAPKTESTKVSGRAMEMAVEFQQERQRRGKPDLETEADKPSPWSK
GLKNKSEGSDEPRPFRKRKVGSDETEVVKPSNELLPETDGETVEEQEPQKKRKPKKTPPR
KGGKRPAVAARKAAQKAEKAESAQRAAKKAAKKKLKKKLSKKSPGDKGAGNKGPGKKGPG
NKGPR
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcaagacaagccaaattctacctccaatgacagcgttgggtcgggtgccgacccc
catgccgagcgcgaggcagagaagtacgaaaagcccgttcccagccgcgaatttctgctg
gacttgctggagcagcagtctgagccggtggcctgggagacggtggctgacctgctctct
attgatgatgaagaccgccgcgaaggggtgcgtcgacgcctgatcgccatgtcccgggat
ggccagattgccagcaatcgcgccggggatttcggcgtgctggacaagatgagcctggtg
cgagggcgtgtgatcggccatcgcgacggttttggttttgtctcccccggggatggcagc
gatgatctgttcctgtcccaccgccagatgcgcaaggtattcgacggcgacgaggtgctg
gttcgggaaacccccggcggctttcgcggcaagcgcgaaggtgccgtggtccgggttctc
aagcacaacacccatgagcttgccggtcgcctctaccgtgaagatggcatctgcttcgtg
cgtccggacaacccgcgcctgaccctcgatgtgatggtgccggaggacaagagtgccgac
gcggaaagcggccagtatgtggtggtgaaacttaccgcccagccgggacgcaataccctg
ccccacggtgaagtgaccgaagtactcggtgaccacctggcaccgggcatggagattgac
gtcgcgattcgcaattacgcgattcctcacacctggcccgcggcggtggaagcgcaggct
gcggagattgccagcgaggtgttggaagaggacaagaagcctcgtatcgatctgcgtcag
ttaccgctggtcaccatcgacggtgaagatgcgcgggactttgacgatgcggtgttctgt
gaagtgctgccggatggcaattggaaactgctggtggcgatcgccgatgtttcccactat
gtacaggtcggtacgccactggatatagaggcccacgagcgcggcaactcggtgtatttc
ccggattttgtggtgccgatgttgccggagaaactctccaatggcctctgctccctgaac
ccggaagtggaccggctgtgcatggtgtgcgagatgcacatcgatgaaggcggcaacatt
gtcgattaccaattcttcgaaggcctgatgcgtagtcacgcgcgttttacctatacccag
gtcggtgaaattgtggccgaacgggatgatcgcaacagcggtgtgcgcaagcagtttgct
gcgctcacgccccatatcgataacctgcacgacctgtacagcgctctgcgcagtgcccgc
gatcgtcgcggcgcgattgattttgaaaccaccgagacccgcatcattttcgatgctgcg
cgcaaaatcgagcgcatcgtgccggtgcagcgcaacgacgcgcacaagatgattgaagag
tgcatgctggcagccaatgtctgcgccgcagagattatggagctggcggaattgccgacg
ctgtatcgggtgcacgatacgcccaagtctgaacgcctggagaaactgcgggattacctg
ggtgagctgggtctgcgtctggagggcggtagtgagccgcagccgagcgactatcaggcg
ttgttggatcaggtcgagggtcgtccggattttcacatcatccagaccatgctgttgcgc
tccatgaatcaggcagtgtaccagccggaaaaccgtggccacttcggtctcgactaccgt
gcctatgcgcactttacttcgcctatccgccgctatccggatctgttgttacaccgcggt
ctgcgctggctgatcagaaacggcagcgccaatcctcccgccgtggcagaaaaggtgcgc
caggcgccgggcgcgcatgccattgatcgcgaggcgatactgccttacggcaccggcgcc
atggtggagctgggggagcactgttccatgaccgagcgccgcgctgacgatgcgacccgc
gatgtggtcagttggctcaagtgcgaatatctgcaggatcacgtgggcgagatttaccgc
ggtgtggtcagtgcggtcaccggttttggcctgtttgtggagctcgacgatctctatgta
gagggcctggtgcacgttacggcgctgccaaaggatttctatcattttgaacaggcacag
cagcggctggtcggcgaacgcagcggtgcgcgctatcaccttggcgacggagtcaccgtc
caggtggcgcgggtggatctggaagagcgcaaggtggacttctcctttgtggagttacac
ccgcgccccagttacaaaaatcccaagtaccgcaaacccaaggccgatagcaaatcgaaa
accgatacaaaacccaaaaccgatacaaagtccaaggccggaaaaaaggcccccaaaact
gaaagtactaaagtgagtggtcgcgcgatggaaatggcggtggaattccagcaggagcgc
cagcgtcggggtaagcccgatttggagactgaagcagacaagccgagcccgtggagtaag
ggcctgaaaaacaaatcggaaggcagcgacgagccgcgcccgttccgcaagcgcaaggtt
ggcagcgatgagacggaagtggtcaaaccttctaatgagctgttgcccgaaaccgatggc
gaaaccgtagaagagcaggagccacagaagaagcgcaagcccaagaaaactccgccccgc
aagggcggcaagcgtccggccgtagccgcgcgcaaggcagcgcagaaagcggaaaaggcg
gaatccgcgcagcgggctgccaagaaggcggcaaagaaaaagctcaagaaaaaactgagc
aagaaaagccctggcgataaaggagccggaaacaagggacccggaaaaaaagggcccggt
aataaaggcccgaggtaa
DBGET
integrated database retrieval system
