Mugil cephalus (flathead mullet): 125010256
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Entry
125010256 CDS
T08342
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03030
DNA replication
mcep03410
Base excision repair
mcep03420
Nucleotide excision repair
mcep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125010256 (lig1)
03410 Base excision repair
125010256 (lig1)
03420 Nucleotide excision repair
125010256 (lig1)
03430 Mismatch repair
125010256 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcep03032
]
125010256 (lig1)
03400 DNA repair and recombination proteins [BR:
mcep03400
]
125010256 (lig1)
Enzymes [BR:
mcep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125010256 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
125010256 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
125010256 (lig1)
DNA replication proteins [BR:
mcep03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
125010256 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
125010256 (lig1)
DNA repair and recombination proteins [BR:
mcep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
125010256 (lig1)
NER (nucleotide excision repair)
Other NER factors
125010256 (lig1)
MMR (mismatch excision repair)
Other MMR factors
125010256 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
125010256
NCBI-ProteinID:
XP_047444679
EnsemblRapid:
ENSMGCG00000006875
LinkDB
All DBs
Position
7:7450527..7521789
Genome browser
AA seq
988 aa
AA seq
DB search
MQRSIASFFQPKSKDAQKKTADEPVKKPTKSPLKVQNGVQESDSPIKKVVKRCRQIVDSD
EEEAPDVKEQVAAKAQTDKDGSDKTQKKDDVFKAVPTPLSPPPAPTTPATPATPASSASP
GTPTTPNSISPSGIVKRKTARKMFPKRKLDESRSGGESQREEAGPGEEQGQQSKRPRVES
VDPGAGSTDEPMEEGAKEETVEKAVTEANGPDEEVEKKKKKKKSSDEKGKKAEGAEKKNE
AKEEEDDDDDEVVEKNTQKKGESPKSQTPKEQKDKEPAKKAPISSFFVPRKAAAAAVKTE
KTDKSEGEEKNNKKKSGDRRSSEEESKDVKGESEQADYNPSRPSYHPVDHACWKQGQKVP
YLAVARTFEKIEEDSGRLRNIETLSNLFRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELG
VGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFQPASLTAGGVFRKL
KEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALGQAVC
LTPPGQGFPPTVIDAGKGMSAESRRAWIEEKTLILKQTYCEMPNYDVLVPVLLKEGIDQL
PNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFS
RNQEDNTSKYPDIISRIPKMKKDSVVSCVLDTEAVAWDREKKQIQPFQVLTTRKRKDVDA
SEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLKESFLEVEGEFVFARSIDSDNTEAIA
EFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTMDLCVIGAYLGK
GKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPRPRAYYRVDQ
SAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDPEKGISLRFPRFLRIRDDKKPEDAT
TGAQIADLYKKQQQIQNQGDKADPEDYY
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagagcaaggacgctcagaagaaaact
gcagatgaacctgtgaaaaaacctaccaagagtcctctgaaggtgcagaacggtgtgcag
gaatcagactcgcccatcaagaaggtggtcaaacgctgccgccagatcgtggacagcgat
gaagaggaggcgccggacgttaaggaacaagtcgccgcgaaggcacagacggacaaggac
ggctctgataaaacacaaaagaaggatgacgtgtttaaggcggttcccaccccgctgtct
ccaccaccagccccgaccacgcccgccaccccggctaccccggcctcttcggcttcaccc
gggaccccgacaacccccaactccatctccccgtccggcatcgtgaaacgcaagaccgcg
aggaagatgttccccaagaggaagctggacgagagcaggagcggcggcgagagtcagagg
gaggaggccgggcccggggaggagcagggtcagcaaagcaagcgaccccgcgtggagagc
gtcgaccccggagcaggaagcaccgacgaacccatggaggagggagcaaaggaggagacg
gttgaaaaggcagtgaccgaggctaacggcccggatgaggaggtggagaagaagaagaag
aagaagaaaagctctgatgagaaaggaaagaaagctgagggggcggaaaagaaaaatgaa
gcaaaggaggaggaggacgatgatgatgatgaggtggttgaaaagaacacgcaaaagaaa
ggagagagcccgaaaagtcagacaccaaaggagcagaaagataaggagccggccaagaag
gcccctatcagcagtttctttgttcccagaaaagcagcagcagcagcagtgaagacggag
aaaacggacaagagcgaaggagaggagaagaataataagaagaagagcggcgacaggagg
agttcggaagaggagagtaaagatgtgaaaggtgaatcagaacaagccgactacaatcca
tccaggccgagctaccaccccgtggaccacgcctgctggaagcaaggccagaaagtcccg
tacttggcggtcgctcgcacgtttgagaagattgaagaggactcgggaaggctgaggaac
atcgagacgctgtcgaacctgtttcgctccgtgctgctgctctctccagatgacctgctg
tgctgcgtgtacctgtgcttgaaccagctgggtcctgcctacctggggatggagcttggc
gtcggagagacggttttgatgaaagctgttgctcaagcaactgggcgacaattggacaaa
attaaagcggaggctcaggagaaaggcgacttgggcctcgtggcggagagttcccgtagc
aaccagcgcatgatgttccagccggccagtctgacagcagggggcgtattcaggaaattg
aaggaaattgccagcatgagtgggaactcggccatgaataagaaaatcgacatcatcaaa
ggcctctttgtggcatgccgcttttcagaggcccgctacatagtcaggtctctggctggg
aaactgaggatcggcctcgctgagcagagcgtcctctctgcgctgggtcaagctgtctgt
ctgaccccgcctggacaaggtttccctcccactgtgattgatgcagggaaggggatgagc
gctgagagcaggcgggcctggatcgaagagaagactctcattctcaaacagacttactgc
gagatgcccaattacgacgtcctcgtccccgttctcctaaaagagggcatagaccagcta
cccaatcactgcaagctcactccaggtgtaccgctgagacccatgttggctcaccccacc
aagggcgtcggcgaggtgatgaagaggttcgacgaggccgcgttcacctgcgagtacaaa
tacgacggggagcgcgcacagattcacattctggagaacggcgaagttcgaatattcagc
cgcaaccaggaagacaacaccagcaaatacccagatatcatctcacgcattcccaagatg
aagaaggactcggtggtgtcctgcgtcctggacacggaggcggtggcctgggaccgtgag
aagaagcagatccagcccttccaggtcctcaccacccgcaagagaaaggatgtggatgcc
tcggagatcaaagtccaagtgtgtgtgtacgcctttgacctcctctatctgaacggcgag
tccctggtgcgacagccgctgtgtcggcgtcgggctctgctcaaagaaagcttcttggag
gtggaaggagagtttgtgttcgcccgatccatcgactctgacaacaccgaagccatcgca
gagttcctggagcagtctgtccgagactcctgcgagggcctcatggtgaagactctggag
aaggacgccacctatgaaatcgccaagcgctcgcacaactggctcaagctgaagaaggat
tacctggagggggtgggcgacaccatggacctgtgtgtgatcggtgcctatctggggaag
ggaaagaggacgggaacctacgggggcttcctgctcgcctgctacgacgaggacaacgag
gagttccagtccgtctgcaagatcgggacgggcttcaaggatgaggatctggaacagcat
tacaagttcttaaaggagcacatcctgcccagaccccgagcctactaccgcgtggaccag
tcggccgagccggacgtgtggctggacgccgtgcaggtctgggaggtgaagtgcgccgac
ctctcgctgtcgcccgtctacaaggccgccatggggatggtggatccagagaagggcatt
tctctgaggttcccccgtttccttcggattagagacgacaagaagccagaggacgccacg
actggagctcagattgctgatttgtacaagaagcagcagcagattcagaatcagggggat
aaagccgacccagaggactattactga
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