Mugil cephalus (flathead mullet): 125017308
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Entry
125017308 CDS
T08342
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03013
Nucleocytoplasmic transport
mcep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125017308 (upf3a)
03015 mRNA surveillance pathway
125017308 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
125017308 (upf3a)
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125017308 (upf3a)
mRNA cycle factors
P-body specific factors
125017308 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
125017308
NCBI-ProteinID:
XP_047456213
EnsemblRapid:
ENSMGCG00000013520
LinkDB
All DBs
Position
12:20394125..20401201
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AA seq
473 aa
AA seq
DB search
MRSEKDQMTVGKEKGVVEIQFRDLPRDQENAPGNPKQKEEKKEVFSKVVIRRLPPNLSKD
QLEEQLSPLPSFDYFEFFPADQRCRSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDN
KGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLL
GEIEAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRRE
EERRKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKDKSDTGETDRGKWEKAGGQM
KSKEPKEKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGK
GYCQDRAKKEGHHHSYSYCPDSGDKMGKEDREDLGNRKERLRNKVSEKDRPAMQLYQPGA
RNRKRVSSAAKGYDCIVPAGPVSPEPRAEHCYEVVAVATGLEKGFEKGKDEQQ
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccagatgaccgtgggcaaggagaaaggtgtcgtcgagattcag
tttagggacctcccgagagaccaggagaacgcgcccggaaaccccaaacagaaagaggag
aagaaggaggttttctcaaaggtggtgattcgaaggctcccgcctaacctgtcaaaggac
cagctagaagaacagctaagccctcttccatccttcgactactttgagttcttcccggca
gatcaaaggtgtcgtagtctgtatccccacctgttctccagagcgtacatcaatttcaaa
aaccccgaggacatcctgttgttcagagaccgattcgatggctacgtcttcattgacaac
aaaggtcaggagtatcctgcggtcgtagagttcgcccccttccagaagatttccaagaag
aagctgaaaaagaaagatgcaaaagctggaagcattgaggaagacccagaatataagcgg
ttcttggagaattattcttgtgatgaggagaaatccatggccaacccagagacgctgctg
ggggaaatagaggccaagaccagagagctcatagccaaacggacgacaccgctgctggag
tacatcaaaaataagaaaattgagaaacagaggatcagagaggagaagagagaggagagg
agaagacgagagcttgaaaagaaacgacagagggaggaggagaagaggaagcggcgagag
gaggagaggcgcaaacggaaagaggcggagaagcagaagaaattgtctgataaagatatt
aaaattaagctcctgaagaagagcgacagagacgatgatgtggattcagaccggatgaag
gataaaagtgacaccggagagacagacagaggcaaatgggagaaagctggaggacaaatg
aagtcgaaggagcccaaggaaaaaggtcagcctgagagcgacaaggagcagcgggagcag
catggacgcagacagagggacaaggatcaccgtggaaaggatgaagagaggaaacggcag
cgacaccactacgagtttgacaagttcatgcgtcggaaagatgagaccaaatgggggaag
ggctactgccaggaccgagccaagaaagaggggcaccaccacagctactcctactgtcct
gacagtggagacaaaatgggaaaggaggacagggaggacctgggtaataggaaggaacgc
ctccgaaacaaggtgagcgagaaggaccgtccggccatgcagctctaccagcccggcgcg
cgcaacaggaaacgcgtgagctcggcggccaagggctacgactgcatcgtccccgcgggg
cccgtctcgcccgagccccgggcggagcactgctacgaggtggtcgccgtggcaacgggg
ctggagaaggggtttgagaagggcaaagatgagcagcagtga
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