Momordica charantia (bitter melon): 111012326
Help
Entry
111012326 CDS
T05045
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03022
Basal transcription factors
mcha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111012326
09124 Replication and repair
03420 Nucleotide excision repair
111012326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcha03021
]
111012326
03400 DNA repair and recombination proteins [BR:
mcha03400
]
111012326
Transcription machinery [BR:
mcha03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111012326
DNA repair and recombination proteins [BR:
mcha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111012326
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
111012326
NCBI-ProteinID:
XP_022142125
UniProt:
A0A6J1CK16
LinkDB
All DBs
Position
Unknown
AA seq
491 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAMKLDNLYENAFICEAILRSLPPLAKKFVLQMLYIEAPVAA
KSMEEWVLSDGVSKYKVALDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIYGEVL
AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS
QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGE
LQWLFGDADLLLRFVCLFRGALFFIVLSGFLYFWEFISFLAYDIDTLTEEQRYAIKDLAD
LGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSRLHCEIL
RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVT
DQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNMRLVVKADVH
THMREHLRRQK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaagtaaagatcatagcgaagaatttcatggacatggtggcctccttgcccgcc
atgaagctcgacaatctctatgagaatgcatttatctgcgaagccattctcaggtcactt
ccacctctagccaagaagttcgttttacaaatgttatacattgaagctccagtagcagcc
aagtccatggaggagtgggtgctttcagatggagtctcaaagtataaggttgcccttgat
cgattgattcaattgagagtatttattgagactgcggataggaaaagagaaacaacctac
aggctaaatccaacattccaagcaaacctccaaaagcttttaatatatggtgaagttcta
gccagggaaccaatgccttcaaatataaccgtgaggcttccaagtttggaagatcttgag
gcttatgctcttgatcaatgggagtgcttcttgctgcaattgataaactcaggccaagca
gagaagccatcaaatatcagttcttctgtgatgaaagttttccagaaaggccttctaagt
cagagggataaagaagctccacgactaactgagagtggtttccagttcttgttgatggaa
acaaatgcacaactttggtatatcatcagagaatatatatctaactctgaggagcgaggt
gtggatcctgcagatttgatttcttttctgctagagcttagttttcatgtgacaggagag
cttcagtggctcttcggtgatgcagatttgcttctgagatttgtgtgtttgtttcggggc
gctttgttcttcatcgttttatctggattcttgtatttttgggagttcatctcttttttg
gcttatgatatcgatacactaacagaagaacagaggtatgcaatcaaggatcttgctgat
ctgggacttgttaaacttcagcagggtagaaaagacagttggttcatacctactaaatta
gctacaaatctttcaatgagtttggcagattcttcttcaaggaaacaaggatttgttgtc
gtggagacaaatttcaggatgtatgcttattcttcttccagactacattgtgaaatatta
cgtcttttttcaaggattgagtatcaacttccaaatcttatagttggagcaataacgaaa
gaaagcttgtataatgcttttaagaacggaattacggcagagcagatagttacttttctg
cagcagaatgcacatcctcgtgttgcagagagaataccatcagtccctgaaaatgtcacg
gatcagattaggctatgggaatcagatcttaatagggtcgatattactcccgcacatttt
tacgacgaattcccttccagggaagttttcgaggctgcttgtgactacgcccgagaatgg
aacgggttgctatgggaggactcgaaaaacatgcggctcgtagtgaaggcggacgtacac
acacatatgcgggaacatcttcgtcgtcaaaaatag
DBGET
integrated database retrieval system
