Momordica charantia (bitter melon): 111018188
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Entry
111018188 CDS
T05045
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111018188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcha03400
]
111018188
Enzymes [BR:
mcha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111018188
DNA repair and recombination proteins [BR:
mcha03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111018188
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
PRF
Motif
Other DBs
NCBI-GeneID:
111018188
NCBI-ProteinID:
XP_022149862
UniProt:
A0A6J1D959
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MTELINFNVLSTLFDWIQRSKSSAKKRSKFRKFLDTFCSSADYFSAIRLILPTLDRERGT
YGLKESVLATCLIDALGISRDSDDALRLNNWRKGGAKTGANAGNFALVAAEVLQRRQGMT
PGGLTIKELNDLLDRLALSENSRAEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRRKRHKRQDIEVGKAVRPQLASRVSNANAAW
KKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYGRGMSDVIVENIIATRCIL
DGEMLVWDKSLNRFAEFGSNQEIARAAKDGLDSDRQLCYVAFDVLYVGDTSVIHRSLKER
HELLRDVVKPVKGRLEILVPNGGLNSDCAGDPSWSQRAYNADDVERFFKNTIENRDEGIV
IKDMGSKWEPGDRSGKWLKLKPDYVRAGSDLDALIIGGYYGSGRRGGEVAQFLMGLAERS
PSNAYPRRFISFCRVGTGLTDEDLDAVTNKLRPYFRKSEYPKKAAPSFYQVTNNSKERPD
VWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELVH
SSNGNTQRGTDNSGWQDSNRKFIKSTGKRRKKSVSVVPSHLLQTDISGIKEDSLIFSNML
FYIVNVPPTHSLDSLHRLIVENGGTFSMNLNDSVTHSVAADTKAGIKYEAARRRGDVIHY
SWMLECCSQKKLLPLQPKHFLFLSDHSKKKLEEEIDAFSDSYFWDLELADLKQLLSNVSR
SEDVKAIDYYRGKYCPKDEWSIFVGFQIYFLPLRPSLKFDWDVLLELSMRRLKVEVSFRG
GKVSDNHVSATHVVVFCIPGSSVDCETVLKCFNEAEKHVILKNKIHIVAHQWLEDCLERA
HRLQEDAYSLKPNWKKSIEKLNSDIDSETPLASENTENQKISSPSNAYKDQGRNEAASGQ
HMLLHSTERSGGKKRGKSTARSMQKGKLSVEQVRRARARTAKGPAKISEVESDSSDYNDE
KTNAETENIGTPCSENLKTNELTKLENFDPSRKGKGIEHVPLCSTERTGEKKRGRRPTPT
ASARSMQKGKAGVEQGQRTRARTAKGSAKIGGVESDSSDTTDDKTNAEGNGVEKRNIGTV
CPANSNTNEFIWPENCDSSHKGKVIEQDDLAEFKSNVPEIEISTRYNCQGIEESEKLEVM
TDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPVQNNSEPTKKKVSYKDVASELLKDW
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgacggagctcatcaacttcaatgttctatcaactctgttcgattggattcagcggagc
aaatcttccgccaagaagcgttccaagttccgcaagtttctcgacaccttctgcagttct
gccgactatttctccgccatccgcttgattctgcccaccctcgaccgggagcgcggcacc
tatggcctcaaggagtctgtactcgccacttgccttatcgacgctcttggcatctctaga
gactccgacgacgctcttcgtcttaacaattggcgcaaaggcggtgctaagactggagct
aatgccggcaatttcgctcttgttgctgccgaggttttgcagcgcaggcaaggaatgacc
cctggtggtctaacaattaaagagttaaatgatctgctggaccgtttggctttaagtgaa
aacagcagagcagaaaaaactgcagttctgtctactcttatacagaagacgaatgcacag
gaaatgaagtggattgtcatgataatcctcaaagatctgaaactgggagttagtgaaaag
agcatttttcatgagttccatccagatgcagaagacttattcaatgtcacctgtgactta
aaactggtttgtgaaaagctaagggatcgtagaaaaaggcataagcgtcaggacattgaa
gttggaaaagctgtgcgaccgcagctggcttcaagagtttccaatgcaaatgctgcatgg
aagaagcttcatgggaaggaagttgtagtcgaatgcaagtttgatggtgaccgtattcaa
attcataagaatggaactgaaatacacttcttttcaaggaactttctcgatcactcagaa
tatggacgtggaatgtctgatgttattgttgaaaatattattgccactaggtgtatactt
gatggtgaaatgttggtgtgggataaatctttaaaccgttttgcagagtttggctcaaac
caagaaatagcaagggcagcaaaggatggattggacagcgatcgtcagttatgctatgtt
gcgttcgatgttctttatgttggagatactagtgttattcacaggagtttgaaagaaaga
catgagcttctgagagatgtagtcaagcctgtgaagggacgattggaaattttagtacct
aatggtggtcttaatagtgactgtgctggggatccttcttggtcacaaagagcttataat
gccgatgatgtggaaagattttttaaaaataccattgaaaatagagatgaaggtattgtt
attaaggacatgggttccaagtgggaacctggtgatcgtagtgggaagtggttaaaatta
aagcctgattatgttcgtgctggatctgatttggatgccctcatcataggaggttactat
ggctctgggcgacggggtggggaggtagctcaatttctgatgggtcttgctgagcgttca
ccctcgaatgcatatcccagacgatttatttccttctgccgagtaggaactggacttact
gatgaggatttagatgctgttacaaacaaactgaggccttattttaggaaaagtgaatat
ccaaagaaggctgcaccgagcttttaccaagttacaaataattcaaaagaaagaccagat
gtttggattgaaagccctgagaaatcaatcattctttccattaccagtgatatacgaact
ataaagtctgaggtctttgcagcaccatatagcctaagatttccgcgcatagaccgtgtt
cgatatgacaaaccttggcatgaatgtcttgatgtgcaatcttttgtagagttggttcat
tcaagtaatggtaacacgcaaaggggcacagataatagtggctggcaagatagtaatcga
aagttcattaaatctactggaaagagaaggaagaagagcgtatctgttgttccttctcat
ttacttcagaccgatatttctggcattaaagaggactccttgattttctcaaatatgtta
ttttacattgttaatgtgcctccaacccattctctcgattccctgcacagattgattgtg
gagaatgggggtacattctctatgaatttgaacgattctgttacacactctgttgctgct
gacaccaaggcaggcatcaaatatgaggctgcaagacgtcgtggcgatgttattcattat
tcttggatgttggaatgttgttcccagaagaaactgctgcctctacagcctaagcatttt
ctctttctctctgaccattcaaagaaaaaattggaagaggaaattgatgcattttctgac
tcgtacttctgggatcttgaacttgcagacctgaaacagctattaagcaacgttagtaga
tcagaagatgtgaaagctattgactactacagggggaaatactgtccaaaagatgaatgg
agtatatttgttggtttccaaatttacttccttcctttaagaccatctttgaaatttgat
tgggatgttctgttggagctttcaatgaggagattgaaggttgaagtttcattcagaggt
ggaaaagtcagtgataaccatgtttctgctacccatgttgtagtcttctgtatacctgga
tcttccgtggattgtgaaacagtattgaaatgcttcaatgaagcggagaaacatgtcata
ttgaaaaataagattcatattgttgcacatcagtggttggaagactgtttggagagggcc
cacaggttacaagaagatgcatatagcttgaaacccaattggaaaaagtcaatcgaaaag
ttaaattctgacatagattctgagacaccattggcctcagaaaatacagaaaaccagaaa
atttcttctccttccaatgcatataaagatcaaggaagaaatgaagctgcttcaggacaa
cacatgctcttacattcaactgagagatctggtggcaagaaaagaggaaaatctactgca
aggagcatgcagaaagggaaattgagcgtcgaacaagttcgaagagctcgggcacgaaca
gccaaggggcctgcaaaaataagtgaagttgagtcagacagcagtgactataatgatgaa
aaaacaaatgcagagactgaaaatattggaacaccatgcagtgaaaacttgaaaacgaat
gagcttacaaagctggaaaactttgatccttcacgaaaaggcaagggcattgagcacgtg
cccttatgttcaaccgagagaactggtgagaagaaaagaggaagaagacctacacctact
gcaagtgcaaggagcatgcagaaagggaaagcaggcgttgaacaagggcaaagaactcgg
gcacgtacggccaaggggtctgcaaaaataggcggtgttgaatcagacagcagtgacact
actgatgataaaacaaatgcagaaggaaatggagtggagaaacgaaatattggaacagta
tgcccagcaaactcgaacacaaatgagtttatatggccagaaaattgtgattcctcacat
aaaggaaaggtcattgaacaagatgatcttgcagaatttaaatctaatgttccagaaatt
gaaatatctacaaggtacaattgccaaggcattgaagaatctgagaagctggaagtcatg
actgatccacttcaggccatgttattagatatggttcctagtcttggaatgagtgaaact
aaaagtagcagtactgttctcgaggagaagcagccagtgcaaaacaattctgagccaacg
aagaagaaagtgagctataaggacgttgccagtgaattgctcaaggattggtaa
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