Momordica charantia (bitter melon): 111025320
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Entry
111025320 CDS
T05045
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111025320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcha03021
]
111025320
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111025320
Transcription machinery [BR:
mcha03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111025320
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111025320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Ribonuc_2-5A
zf_UBZ
VHS
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
111025320
NCBI-ProteinID:
XP_022158855
UniProt:
A0A6J1DX06
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MESEKLVISRGNPRTSPYPSDRALPTTSGRAMPNELPQKPPPSIAHRFRALLKQRDDEFR
VSAHDAATPPSTEDIVQLYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICERIL
EVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPQVFCEAYRQVHPNLHNALRHLFGTWS
TVFPPSILRNIEAQLQLSQLTTQESSGLTSSRSSESPRPTHGIHVNPKYLRQLEHSVVDK
LLALQHIQDARGTSALKVHDKKLAPGYEEYDYDGTQAFSSIGSMGHDSFAVGTNKANMKL
EKSSLSSRIGHNRSLQSVGDELEAVRASPSQNVYDYEASRMIDRSEDTNKWRRKQYPDDH
LNGLESTYSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQVEHFSINGIDNKVTPVT
WQNTEEEEFDWEDMSPTLADRGRSNDILKPPVPPSRFRPRLGFDKSNATSVEPGMRSSWS
SQVQLPTSLDSSIVTEDVVPSASDIWNMQNPMNAKGIGTNFQMPLSRRGIASSGEKVSPF
VDKLPTNDALHRPPTIVSRLGPSGPDSSMESQSAVQSMGPRHPVNVPNSCPPSRPPMFPV
PRHNASQFDSLSGSNSFIHRANRSPFLPEQQMNNLRNKEPSLTTKLPQVGNHHTGCIPLT
KGNQLQAIHLKPQFLPSQDMQDNFSASVVPPALPHLMAPSLSQGYSSQGHRPANSECLSS
SAPIGQWNLPVHNSLSNPLHVLGGTLPPLPPGPHPTSVQTMPVSQNAGCLIPGQQPGTAF
SGLISSLMAQGLISLNNQPSVQDSIGLEFNPDVLKVRHESVIAALYGDLPRQCMTCGLRF
KSQEEHSNHMDWHVTKNRMSKSRKQKTSCKWYVSKSMWFSGAEALGNGAVPGFLPAEVIV
EEKDDEELAVPADEDQNACALCGEPFDDFYSDETEEWMYRGAVYMNAPDGQTAGMDRSQL
GPIVHAKCRSESNVVSSEKFDQDDQGGVSEEGNRRKRLRS
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggaatcggaaaagctcgtaatttcacgaggaaaccctagaacttcaccatatccatcc
gaccgcgcactccccaccaccagcggcagggctatgcccaatgagttgccacaaaagcct
cccccttcaattgctcaccgtttcagagctctgctaaagcagcgggatgacgaattcagg
gtttctgcccacgatgctgcgacccctccttcaactgaggatattgtgcagttgtacgag
ctcatgttgtcggagctcacctttaattcaaagcccatcatcacggatctcactgttctt
gctgacgagcagagagaacatgggaagggcattgccgacttaatttgtgagcgtattctc
gaggttccggttgaccaaaaacttccttcattatatctattggatagtattgttaagaat
gttgggcacgaatacattagttatttctcgtctcgtttacctcaggtgttttgcgaggct
tacaggcaagttcatcctaatctgcacaatgcattgcgtcacctctttgggacatggtca
actgtgtttccaccatctatccttcggaatattgaagctcaattacaactttctcagcta
acaacacaagagtcctcaggtttgacatcctcaaggtcctctgaatctcctcggccaact
catggtattcatgttaatccaaaatacttgcgtcaactggaacactccgtggtggataaa
cttttagctctacagcatattcaagatgcaagagggacttcagctctaaaagttcatgat
aaaaaacttgctcctggatatgaagagtatgactatgatgggactcaagcatttagttca
atcggaagcatgggtcatgattcttttgctgttggaacgaataaagcaaatatgaagcta
gaaaaatcttctttgtcttcaagaattggacacaacaggtctctacaatctgttggtgac
gaacttgaagcagttagagcctcaccatcacagaatgtctatgattatgaagcttctaga
atgattgatagaagtgaagatacaaataaatggagaagaaaacagtatcctgacgatcat
ttgaatggacttgaaagtacttattcgtataatattagaaatggacatgcacttgaggga
ccaagagctttaattgaagcatacgggagcgataaaggaaaaggttatttaaatgacaat
ccgccacaggttgaacatttttctattaatggtatagacaacaaggtgactccagtgact
tggcagaacaccgaagaagaagagtttgattgggaagatatgagccccacattagctgac
agaggcagaagtaatgatattttgaaaccacctgtcccaccttcaagatttaggccaaga
ttaggatttgataaatcaaatgctacgtctgtagagcctggaatgagaagcagttggtct
agtcaggttcagctaccaacttctcttgattcctccattgttactgaagatgtggtccca
tcagcatctgatatttggaatatgcagaaccccatgaatgctaaaggcataggaacgaat
tttcagatgcctttgtctaggagaggcatagcttcatctggtgagaaagtgtctcctttt
gttgataaacttccgaccaatgatgctttacataggcccccaaccattgtttcaagattg
ggtccttctggtcctgactctagcatggagtcacaatcagctgtacaatctatgggccca
aggcatcccgtgaacgttcctaactcttgcccaccgtctaggcctccaatgtttccagta
ccgagacacaatgcgagtcagtttgattctttaagtggtagcaattctttcatccatcgt
gcaaataggtcaccttttttgcctgagcagcagatgaataatttgaggaacaaggagcca
agtctaacaactaagttgccacaagttggaaatcaccacactgggtgtattcctttgact
aagggaaaccaattgcaggccatccatttaaaaccacaatttcttccatctcaggatatg
caggataatttcagtgcatcagtagtacctccagcattaccacatttaatggcaccatcc
ttgagtcaaggatacagttcgcagggacatcgtcctgctaatagtgagtgtttgtcaagt
tctgcccctattggacaatggaacttaccagttcataacagtctcagtaatcctttgcat
gtactagggggtacactgccacctctacctcccgggcctcatcctacttctgttcaaacg
atgcctgtctctcaaaatgcaggatgccttattcctggtcagcaacctggaactgcattt
tctggtctgataagttctctcatggcccagggtttaatctctttgaacaatcaaccttct
gtacaggattctattgggttagagttcaatccagatgttctcaaggtgcgacatgaatct
gtaatagctgccctatatggtgatctcccaagacaatgcatgacctgtggccttcgattc
aagtcccaggaagaacatagtaatcatatggattggcatgtcactaagaatcgtatgtca
aaaagtaggaagcaaaagacttcttgtaagtggtatgtaagtaaaagcatgtggtttagc
ggtgcagaggctttaggaaatggggcagttccgggatttttgcctgctgaggttattgta
gaggaaaaggacgatgaagaactggctgttcctgctgatgaggatcagaatgcatgtgca
ttatgtggagaaccttttgatgatttttacagtgatgaaacagaggaatggatgtatagg
ggtgccgtctacatgaatgcacctgatggacaaacagccggcatggatagatctcaatta
gggcccatagtgcatgccaaatgtaggtctgaatctaatgtggtttcctctgaaaagttt
gaccaagatgatcaagggggagttagtgaagagggtaatcgaagaaaacgattgcggagc
tag
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integrated database retrieval system
