Mycobacterium intracellulare subsp. chimaera: AN480_05800
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Entry
AN480_05800 CDS
T04926
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mchi
Mycobacterium intracellulare subsp. chimaera
Pathway
mchi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mchi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AN480_05800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mchi03400
]
AN480_05800
Enzymes [BR:
mchi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AN480_05800
DNA repair and recombination proteins [BR:
mchi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AN480_05800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APD83959
UniProt:
A0A854I3Q1
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All DBs
Position
1187616..1189883
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AA seq
755 aa
AA seq
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MSPTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEQ
ESFFEKQLAASAPDWLPRASVTHRSGTTTYPIIDDPTGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGPATRLVFDLDPGDGVTMAQMSKVARAVRDLIAGIGLSTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLSRVARDGDLLAELDEDAPVPDRL
TKYRSMRDASKTPEPVPAAKPAVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETTSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFLDDEVIVNLH
GSKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEGKWDG
YRLLIEADHGAFRVRSRRGREVTQEYRELRWLADDLADHHVVLDGEAVVLDSSGVPNFHE
MQNRGRGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSRLIVPDLLPGDGREAL
EHSAERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSLL
MGIPTAGGLHFAGRVGTGFTDRDLANLKKTLAPLHTDESPFDPPLPRSEARGVTYVRPEL
VGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgagtccgacggcggggccacgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcggatcgccgaggtgatg
atcccgcacatcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatccttcttcgagaagcaactcgccgcgtcggcacccgactggctgccgcgcgccagc
gtgacccatcgatccggaacgacgacctatccgatcatcgacgaccccaccggcctggcc
tggatcgcccaacaggcggcgctggaggttcacgtcccgcagtggcggttcgtcgctgag
tggacccgcagccgggccgaagaactcaagcccggaccggcgacgcgattggtgttcgac
ctcgaccccggcgacggcgtgacgatggcgcagatgtccaaggtggcgcgcgccgtgcgc
gacctgatcgccgggatcgggctgagcaccttcccgctcaccagcggcagcaagggactg
catctgtatgcgccgctcgacgagccggtgagcagcaaaggcgccacggtgttggccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagctcgtcacgtcgaccatgaccaag
agcctgcgggcggggaagatctttttggactggagccagaacaacggctccaagacgacc
atcgcaccgtattccctgcgcggacgcgagcatcccaccgtcgcggcgccgcgcacctgg
gacgaactcgacgacccgtcgctgcgccagctgcggtatgacgaagtgctgtcccgggtc
gcgcgcgacggcgatctgcttgcagagctggacgaggacgctccggtgccggatcggttg
accaagtaccgcagcatgcgcgacgcgtcgaagacccccgagccggttccggcggcgaaa
cccgctgtcggtcaaggaaacaccttcgtcatccaggaacaccacgcgcgacgtctgcac
tacgatttccggctggagcgcgacggcgtgctggtgtcctgggcggtgcccaaaaacctg
cccgaaaccacgtcggtgaaccatctggcggtccacaccgaggaccatccgctggaatac
ggcgggttcgaaggcgtcatccccaagggcgaatacggcgcgggcaaggtgatcatctgg
gactccggaacctacgacgccgaaaagttccttgacgacgaggtcatcgtcaacctgcac
ggcagcaagatatccggacgctacgcgctgattcaaaccaatggcgaccagtggttggca
catcggatgaaggaccagaaggtcttcgagttcgacaccatcgcacccatgctggccacc
cacggttcggtgacggccctgaaggcaggtcagtgggcgttcgagggcaaatgggacggt
taccggcttctgatcgaggccgaccacggtgcctttcgggtgcggtcgcgacgcggtcgc
gaagtcacccaggaataccgcgaactgcgctggctggcagacgatctcgccgaccatcac
gtggtgctcgacggggaggccgtcgtgctggactcctccggggtgcccaactttcacgag
atgcaaaaccgtggacggggctcacgggtcgaattctgggcgttcgacctgctctacctc
gacggccgctcgttgctgcgagcccgttaccgggatcggcgaaaactgctggaaatgctg
gccgccggcagcaggctgatcgtccccgacctactgcccggcgacggcagagaggcgcta
gagcactccgcggagcgcggttgggagggggtgatcgccaagaagcgcgactccacctat
cagccgggccgccgctcgtcgtcgtggatcaaggacaagcactggaacacccaggaagtc
gtcatcggcggttggaaagccggggaaggcggacgcagcagcggcatcggctcgctgctg
atgggtatccccaccgcgggcgggctgcacttcgccgggcgcgtcggcaccgggttcacc
gaccgcgacctggccaacttgaagaagacgctggcgccgctgcacaccgacgaatccccc
tttgacccaccgcttcccaggagcgaagcgcgcggcgtgacgtatgtgcgcccggagctg
gtgggggaggtgcgctacagcgagtggaccccggatgaccggttacgccaatcgagttgg
cgcggactacgaccggacaaggaggcgagtgaggtggtgcgcgagtga
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