Methanoculleus chikugoensis: MchiMG62_15060
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Entry
MchiMG62_15060 CDS
T07488
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mchk
Methanoculleus chikugoensis
Pathway
mchk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mchk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MchiMG62_15060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mchk03400
]
MchiMG62_15060
DNA repair and recombination proteins [BR:
mchk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MchiMG62_15060
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MchiMG62_15060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
P-loop_SecA
Pyr_redox_2
Motif
Other DBs
NCBI-ProteinID:
BBL68325
LinkDB
All DBs
Position
complement(1515320..1517248)
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AA seq
642 aa
AA seq
DB search
MTEFHLKADFKPTGSQPDAIRKLSGGLDRGERFQTLLGVTGSGKTFTIANVVEEVQKPTL
VIAHNKTLAAQLYNEFRSFFPENRVEYFVSYYDYYQPESYIAKRDLYIEKDAQINPKIEQ
MRLAATASILSRPDTIIVASVSCIYGLGNPANFQGMGFEVKVRDRMRRDDIIRKLIDIQF
ERNETELMPGRFRAKGDTIDIIPGYFNNIIRIELFGDEIDRISEIDKTSGERLEAMDYFF
VYPARHFVAPDEVKEQAIVSIEEELEERLPTLGMLEAHRLRQRTLYDIDMIRETGTCKGI
ENYSRHFDGRKAGEQPYCLLDYFPEDFLMVIDESHQTLPQVRGMYRGDYSRKKSLVDYGF
RLPSAFDNRPLKFDEFSGYMRNVIFVSATPGDYELKRSSVAEQIIRPTGLVDPAVEVRPI
EGQIPDVMAEIRATIERGDRILLTTLTKRLAEELSEYLAEQGIKTRYLHSEIETIERTEI
IRQLRLGKYDVLVGINLLREGLDIPEVGFVGILDADKEGFLRDARSLVQTIGRAARNVNA
KVVLYADTMTDSIKKAMAETGRRRAMQLAYNAEHGITPQTIVKPIREKEVDITDIKHVPK
AEVPNLIIELEADMREAAERLEFERAIALRDTIRRLQEGKGR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatttcaccttaaggcagacttcaagccaaccggctcgcagcccgatgcgatc
cggaaactcagcggcggactcgaccgcggcgagcggttccagaccctcctcggggtcacg
ggctcagggaagacattcacgatagcaaacgtcgtcgaggaggtccagaaacccaccctc
gtcattgcccacaacaagacgcttgccgcccagctctacaacgagttcagatccttcttc
cccgagaaccgggtggagtacttcgtctcctactacgactactaccagcccgagtcttac
atcgcgaagcgcgacctctacatcgagaaagacgcccagatcaaccccaagatcgaacag
atgcgcctcgcggccaccgcgtcgatcctttcgcgccccgacaccatcatcgtcgcctcg
gtctcctgcatctacggtctcgggaaccccgcgaacttccaggggatggggttcgaggtg
aaagtccgggacaggatgcggcgggacgacatcatacggaaactcatcgatatccagttc
gagcgaaacgagaccgagctcatgccgggccggttccgggcgaagggcgacaccatcgat
atcatccccggctacttcaacaatatcatccgtatcgaactcttcggggacgagattgac
cggatcagcgagatcgacaagacctcgggagagcggctggaggcgatggactacttcttc
gtctaccctgcccgccactttgtcgcccccgatgaggtaaaagaacaggcaatagtctcg
attgaggaggaactcgaggagcggctcccgaccctcgggatgctcgaggcacaccgcctc
cgccagcggacgctctacgacatcgatatgatccgcgagaccgggacctgcaagggtatc
gagaactactcccgccacttcgatgggcggaaggccggggagcagccctattgcctgctg
gactacttccccgaggacttcctgatggtgatcgacgagagccaccagaccctgccccag
gtccgcgggatgtatcgcggcgactattcgcggaagaaatcactcgtggactacgggttc
cggctcccgtcggcgttcgacaacaggccgctgaagttcgacgagttctcgggctatatg
agaaacgtcatctttgtctcggcgaccccgggagactacgaactgaagcgttcgagcgtc
gcggagcagatcatccggccgacggggctcgttgacccggcggtcgaggtccggccgatt
gaggggcagatcccggacgtgatggccgagatccgggcaaccatcgaacgcggcgaccgc
atactgctgacaaccctcacaaaacggctcgccgaggaactctcggagtacctggccgag
caggggatcaagacccgatacctccactcggagatcgagaccatcgagcggacggagatc
atccggcagctccgtctcgggaagtacgacgtcctcgtcgggatcaacctcctgcgggag
gggctcgacatccccgaggtggggttcgtcggcatcctcgacgccgacaaggaagggttc
ctccgcgacgcgaggagcctggtccagacgatcgggcgggcggcccggaacgtcaacgcg
aaggtcgtgctctacgccgacaccatgaccgactcgatcaagaaggcgatggccgagacc
gggcggcggcgcgcgatgcaacttgcgtacaacgcagagcacggcatcacgccgcagacg
atcgtaaaaccgatccgtgagaaagaggtcgatattaccgatatcaagcacgtcccgaag
gcggaggtcccgaacctgatcatcgagctcgaggccgatatgcgggaggcggcggagcgc
ctggagttcgagcgggcgattgccctgcgggatacgatcaggaggttgcaggaggggaag
ggacggtag
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