Mycolicibacterium chitae: MCHIJ_23250
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Entry
MCHIJ_23250 CDS
T06603
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mcht
Mycolicibacterium chitae
Pathway
mcht03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MCHIJ_23250 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcht03400
]
MCHIJ_23250 (ligD_2)
Enzymes [BR:
mcht01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MCHIJ_23250 (ligD_2)
DNA repair and recombination proteins [BR:
mcht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MCHIJ_23250 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BBZ02888
LinkDB
All DBs
Position
2412877..2415138
Genome browser
AA seq
753 aa
AA seq
DB search
MGSRESQVRLTNADKVLYPETGTTKAEVFDYYIAVAQVMLPHIAGRPVTRKRWPNGVEQG
DFFEKQLASSAPQWLSRGSVTHRSGTTTYPIIDSVDGLAWVAQQAALEVHVPQWRFVDDK
PGPATRIVFDLDPGEDVGMDLICTVAREVRALMDDIGLRTFPLTSGSKGIHLYVPLDEPV
SSRGASVLAKRVAQQLEQAMPRQVTATMTKKLRAGKVFVDWSQNSAAKTTIAPYSMRGRA
QPTVAAPRTWDELDDSELRQLRFDEVLDRVARDGDLLEGLDGAVPMPDRLTTYRSMRDDT
RTPEPVPSAKPAVGENNTFVIQEHHARRLHYDFRLERDGVLVSWAIPKNLPESPSVNHLA
VHTEDHPLEYATFEGTIPKGEYGGGKVIVWDSGTYEAEKFRDPPEPGQKGEVIVTLRGNK
VSGRYALIQTDGKNWLAHRTKDQPQPLPSDLAPMLATHGSVAKLKATQWAFEGKWDGYRL
LFDSDHGTLALRSRSGRDVTKEYPQLRSLAADLAEYHVLLDGEVVALDEHGVPNFGEMQN
RARATRIEFWAFDLLHLDGRSLLNVKYRDRRKLLETLADGTNLIVSERIPGDGAEALQYS
AEQGWEGVIAKKWDSTYQPGRRSAAWIKDKNWYTQEIVIGGWRQGEGGRSTGIGALLMGI
PAEDGLDFVGRVGTGFTDKELGKLKKLLAPLHTDESPFNTRLSGPDARGVTFVEPTVVGE
VRYGQWTSDGRLRHPSWRGLRPDKSPAEVRREP
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgggatcgcgggaatcgcaggtcaggctgaccaacgccgacaaggtgctgtacccggag
accggcaccaccaaggccgaggtcttcgactactacatcgccgtcgcccaggtcatgctg
ccgcacatcgccggtcgccccgtcacccgcaaacgctggcccaacggcgtcgagcagggc
gacttcttcgagaagcaactcgcgtcgtcggcgccgcagtggttgagccgcggcagcgtg
acgcaccgatcgggcaccaccacctatccgatcatcgacagcgtcgacggcctggcctgg
gtcgcccagcaggccgccctggaagtgcacgtgccgcaatggcgtttcgtcgacgacaaa
ccgggcccggccacccgcatcgtcttcgacctcgatcccggcgaggacgtcgggatggac
ctgatctgcacggtggcccgcgaggtgcgcgccctgatggacgacatcgggctgcggacc
ttcccgctgaccagcggcagcaagggcattcatctgtatgtgccgctcgacgagccggtc
agctcgcgcggcgcgtcggtgttggccaaacgcgttgcgcagcaattggaacaggcgatg
cccaggcaggtcaccgccaccatgaccaagaagctgcgggcgggcaaggtcttcgtggac
tggagccagaactcggcggccaagaccacgatcgcgccgtactccatgcgcgggcgggcc
cagccgacggtcgccgcaccccgcacctgggacgagctcgacgattcggaactgcggcag
ctgcgcttcgacgaggtgctcgaccgggtcgcgcgcgacggggatctgctcgagggactc
gacggcgcggtgccgatgccggaccgattgaccacctaccgatcgatgcgcgacgacacc
cgcaccccggagcctgtgccgtcggccaaacccgctgtgggggagaacaacacgttcgtc
atccaggaacaccacgcccgacggctgcactacgacttccggctggaacgcgacggggtg
ctggtgtcctgggcgatacccaagaatctgcccgagagcccgtcggtcaaccacctggcc
gtgcacaccgaggaccacccgctggagtacgcgaccttcgagggcaccatcccgaagggg
gagtacggcggcggcaaggtcatcgtgtgggattcgggtacctacgaggccgagaagttc
cgcgatccgcccgagcccggacagaagggcgaggtgatcgtcacactgcgcgggaacaag
gtgtccggccggtacgcgctgatccagaccgacggcaagaactggttggcgcaccgcacc
aaggatcagccgcagccgctgccgtcggatctggcgcccatgctggcgacccacggttcg
gtcgccaagctcaaggccacccagtgggcgttcgagggcaagtgggacgggtaccggctg
ctgttcgactccgaccacgggacgctcgcgctgcgttcgcgcagcggccgcgacgtcacc
aaggagtatccgcaactgcgttccctggccgccgatctcgccgagtaccacgtgctgctc
gacggcgaggtggtcgcgctcgacgaacacggcgtgcccaacttcggcgagatgcagaac
cgggcccgggccacccggatcgagttctgggccttcgacctgctgcacctcgacggccgc
tcgttgctcaacgtgaagtaccgcgaccggcgcaagctgctcgagaccctggccgacggg
acgaatctgattgtctccgagcggatccccggcgacggcgccgaagcgctgcagtactcg
gcggagcaaggctgggagggggtgatcgccaagaaatgggattcgacgtatcagcccggt
cgccggtcggcggcgtggatcaaggacaagaactggtacacccaggagatcgtgatcggc
ggttggcgtcagggggagggtggccgatccaccggcatcggggcgctgctgatgggaatc
cccgccgaggacgggttggatttcgtcggtcgggtcggcaccgggttcaccgacaaggaa
ctgggcaagctcaagaagctgctggcgccgttgcacaccgacgaatccccgttcaacacc
cggctttccgggcctgatgcccgcggcgtcacgttcgtcgagcccaccgtcgtcggtgag
gtgcggtacgggcagtggacctcggacggccggctgcggcatcccagttggcgcgggctg
cggccggacaagtcgccggcggaggtcagacgcgagccgtga
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