Mycolicibacterium chitae: MCHIJ_24160
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Entry
MCHIJ_24160 CDS
T06603
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcht
Mycolicibacterium chitae
Pathway
mcht03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MCHIJ_24160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcht03400
]
MCHIJ_24160 (mfd)
Enzymes [BR:
mcht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCHIJ_24160 (mfd)
DNA repair and recombination proteins [BR:
mcht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MCHIJ_24160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBZ02979
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All DBs
Position
2506137..2509778
Genome browser
AA seq
1213 aa
AA seq
DB search
MAFIMTAPGHPYVQTPIAGLTDLALTAPTFVDLMARTAERPGELRLVGPAPAQFLVAAAL
AGQGPLLVVTATGREADDLTAELRGVFGEGAALFPSWETLPHERLSPGVETVGARMLLLR
RLAFPDDTRLGPPLRVVVTTARSLLQPMARGLATAEQTEPVLLSVGGEPGFDQTIARLVD
LAYTRVDMVGKRGEFAVRGGILDVFAPTAEHPVRVEFWGDEISEMRMFSVADQRSITEIP
VDFVIAVPCRELMLTEDVRARAAELMQGKPSPDALTNTVAGSVADMLAKLAEGIPVDGME
ALMPVLLAEDPALLTDQLAPGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAVGGDA
PIDIEQLGGSGFRELGEVRAAAMAGDHPWWTLSQLPDEAAIELDVRPSPSARSQQSLEEI
FAMLRAHVVTGGRAAVVTPGAGTANRVIEQLSENDTPATLLEPGQQPQPGVVGVLRGPLH
HGLVIPGAELVIVTETDLTGNRVTATEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGKF
VEMTERIVGGARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGQAPSLSRLGGSD
WSNTKTKARKAVREIATELVALYAKRQAAPGHAFGPDTPWQAEMEDAFGFTETVDQMTAI
AEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLADQHLQTF
TERMAGFPVTVKGLSRFTDNTESKAVVDGMADGTVDVVIGTHRLLQTGVRWKDLGLVIVD
EEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTY
VGPHDDKQVAAALRRELLRDGQAFYIHNRVSSIDKAAARVRALVPEARVVVGHGQMPEEQ
LEKTVEGFWNREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER
GYAYFLYPPEMPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG
VGFDLYVRLVGEAVEAYRAVADGQTVSGPTEPKDVRIDLPVDAHLPPDYIGSDRLRLEGY
RRLAAAADDDAVRAVVEELVDRYGPLPEPAQRLVAVAQLRLLCRSYGVTELSATGAAGQA
ATLRLSPLTLPDSAQLRLKRVYPGASYRATTATVQVPIPRTGGVGSPRIRDLELVEMVAG
LLRALHGEPAKVD
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggctttcatcatgaccgcaccggggcacccgtatgttcaaaccccgattgcggggctc
accgacctggcgctgacggcgccgaccttcgtggatctgatggcccgcacggccgaacga
cccggcgaattgcggctggtcggtcccgctcccgcgcagttcctggttgccgcggccctg
gctggacaggggccgctgctggtggtcaccgcgaccggccgggaggccgacgacctgacc
gccgagttgcgcggggtcttcggcgagggcgcggcgctgttcccgtcctgggagacgctg
ccgcacgagcgcctgtcaccgggcgtggagaccgtcggcgcgcggatgttgctgctgcgt
cggctggccttccccgacgacacccggctgggaccgccgctgcgcgtggtggtgacgacg
gcgcgctcgctgctgcagccgatggcccgcgggctggccaccgccgaacagaccgagccg
gtcctgctgtccgtcggcggcgagcccggcttcgaccagaccatcgcccggctggtcgac
ctggcctacacccgcgtcgacatggtcggcaagcgcggcgagttcgccgtgcgcggcggc
attctcgacgtcttcgcgcccaccgccgaacacccggtccgggtcgagttctggggcgac
gagatctccgagatgcggatgttctccgtggccgaccagcgctccatcaccgagatcccg
gtggacttcgtgatcgcggtgccgtgccgcgagctgatgctcaccgaggacgtgcgggcc
cgcgccgccgagctgatgcagggcaagccctcgccggacgcgctgaccaacacggtggct
ggcagcgtcgcggacatgctggccaagctcgccgagggcattccggtggacggcatggag
gcgctcatgccggtgctgctcgccgaggaccccgcgctgctcaccgaccagctggccccg
ggcaccccggtgctggtgtgcgacccggagaaggtgcgcacccgcgccgccgacctgatc
aagaccggccgcgagttcctggaggcgtcctggtcggtggccgccgtcggcggcgacgcc
ccgatcgacatcgagcagctcggcgggtccgggttccgcgaactcggcgaggtgcgggcc
gccgcgatggccggcgaccacccgtggtggacgctgagccagctgcccgatgaagccgcc
atcgaactcgacgtccggccgtcgccctcggcgcgcagccagcagtcgctcgaggagatc
ttcgcgatgctgcgcgcccacgtcgtcaccggcgggcgcgccgccgtcgtgaccccgggg
gcgggcaccgccaaccgtgtcatcgaacagctgtccgaaaacgacacgcccgcaacgctg
ttggagcccggtcagcaaccccagccgggcgtggtcggggtgttgcgcggcccgctgcac
cacggcctggtgatccccggcgccgaattggtgatcgtcaccgagaccgacctgaccggc
aaccgggtcaccgccaccgagggcaagcggctggcggccaagcggcgcaacaccgtggac
ccactggcgctcacggccggcgacctggtggtccacgatcagcacggcatcggcaagttc
gtggagatgaccgagcgcatcgtcggcggcgcgcgccgggagtacctggtgctcgagtac
gcctcggccaaacggggcggcggttcggaccgcctctacgtgccgatggactcgctggat
caactgtcccgctacgtcggcggtcaggcaccgagcctgagccggctgggcggcagcgac
tggagcaacacgaaaaccaaggcgcgcaaggccgttcgcgagatcgccactgaactcgtc
gcgctctacgccaagcgtcaggcggcgccgggccacgcgttcggcccggacaccccgtgg
caggccgagatggaggacgcgttcgggttcaccgagaccgtcgaccagatgaccgccatc
gccgaggtcaaggccgacatggagaagccggtcccgatggaccgggtgatctgcggcgac
gtcggttacggcaagaccgagatcgcggttcgggcggcgttcaaggccatccaggacggc
aagcaggtcgcggtgctcgtgcccaccacgctgctcgccgatcagcacctgcagaccttc
accgagcggatggccggcttcccggtcacggtgaaggggctgtcgcggttcaccgacaac
accgagtccaaggccgtcgtcgacggcatggccgacggcacggtcgacgtcgtgatcggc
acccaccggctgctgcagaccggggtgcgctggaaggacctcggactggtgatcgtcgac
gaggaacagcgattcggcgtcgaacacaaggaacacatcaagagcctgcgcacccacgtc
gacgtgctcaccatgagcgccaccccgatcccgcgcaccctggagatgagcctggccggc
atccgcgagatgtcgaccatcctgaccccgcccgaggagcgccacccggtgctcacctac
gtcggaccgcacgacgacaagcaggtggccgccgcgctgcgccgcgagttgctgcgcgac
ggccaggcgttctacatccacaaccgggtcagctcgatcgacaaggccgccgcccgggtg
cgcgccctggtgcccgaggcccgcgtcgtcgtcgggcacggacagatgcccgaggaacag
ctggagaagaccgtcgaggggttctggaaccgggagttcgacatcctggtctgcaccacc
atcgtcgagaccggcctggacatctccaacgccaacaccttgatcgtggagcgcgccgac
accttcgggctctcccagctgcatcagctgcggggccgggtgggccgcagccgcgagcgc
ggctacgcctacttcctgtatccgcccgagatgccgctgaccgagaccgcctacgaccgg
ctggccaccatcgcccagaacaacgaactcggcgccggcatggccgtggcgatgaaggac
ctcgagatccgcggggccggcaacgtgctcggcgccgagcagtccggccacgtcgccggc
gtcggcttcgacctctacgtgcggctggtcggcgaggcggtggaggcctaccgcgccgtg
gccgacggccaaaccgtctcgggcccaaccgaacccaaggatgtgcggatcgaccttccg
gtcgacgcgcacctgccgccggactacatcggcagcgaccggttgcgcctggagggctac
cggaggctggccgcggccgccgacgacgacgcggtgcgcgcggtggtcgaggagttggtc
gaccgctacggcccgctgcccgaacccgcgcagcgactggtcgcggtggcccagttgcgg
ctgctgtgccgctcctacggggtcaccgaactgtcggccaccggggccgccggccaggcc
gcgaccctgcggttgtcgccgctgacgctgccggactccgcccagctgcggctcaagcgg
gtctatcccggggccagctaccgggccaccaccgccaccgtgcaggtgccgatcccgcgg
accggcggggtcggatcgccgcggatccgggacctggagctggtggagatggtggctggg
ctgctgcgggcgctgcacggcgagccggcgaaggtcgattga
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