Melitaea cinxia (Glanville fritillary): 123656239
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Entry
123656239 CDS
T09237
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03022
Basal transcription factors
mcix03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123656239
09124 Replication and repair
03420 Nucleotide excision repair
123656239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcix03021
]
123656239
03400 DNA repair and recombination proteins [BR:
mcix03400
]
123656239
Transcription machinery [BR:
mcix03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123656239
DNA repair and recombination proteins [BR:
mcix03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123656239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
DZR
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
123656239
NCBI-ProteinID:
XP_045447894
EnsemblRapid:
ENSMCXG00005022324
LinkDB
All DBs
Position
9:10349985..10357275
Genome browser
AA seq
404 aa
AA seq
DB search
MADDEQDPKEYRWETGYEKTWEAIKEDEDGLVQGLVAEFAQKAARKAVTSRRGPVRLGMM
RHLLVAIDCSEAMSGQDLKPMRFLCTLKLLEKFVEEFFDQNPLSQLGVIAIKNKRAEKIT
ELSGNIRKHIKAVQGLSNIALTGEPSLQNTLELAARTLRPLPGHASRELLVLFGSLTTCD
PGDINNTIQTLKSDGIRCSVIGLAAEVRICKKLCQDTGGEYGVVLDDVHYRSLLMEHTSP
PARARALDAGLVKMGFPYTPPATQPDADPPITVCMCHLEEGEGDGEGGASGEGHVCPQCR
SKYCSLPAQCRTCGLTLASAPHLARSYHHLFPVDPYEEVKNEGQAQFCFGCLRSFTDLDK
QLYRCSRCSEFYCWECEHVVSSSLHVCPGCASRPHLYQRLPQAD
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatgaacaagatcctaaagaatatcgctgggaaactggctacgagaaaact
tgggaggctattaaagaagatgaagatggtttggttcaaggattggttgccgaatttgcc
caaaaagccgcccgaaaagcggtcaccagtcgtcgtggtcctgtcagacttggcatgatg
cgtcacttacttgtagcaattgattgctctgaagcaatgagcggtcaagatttgaagcct
atgagatttctatgtacacttaaattattggagaagtttgttgaagaattcttcgatcag
aatcctttaagtcaacttggtgttatagcaataaaaaataaaagagctgaaaagataaca
gaactctcgggaaatattagaaaacatataaaagctgtgcaagggttgtctaatatcgcg
ttaacaggggaaccgtcattacaaaatactttggaacttgctgctaggactctgagacct
ctcccagggcatgcatctagagagcttcttgttttatttgggtctctgacaacgtgtgat
cctggagacataaataatacaatacagacacttaaaagtgatgggattaggtgttcggtt
attggattagcagcggaagttagaatatgtaaaaagctatgtcaagatactggtggagaa
tatggggtagtattggatgatgtgcactataggtctctcctaatggagcatacatcaccg
ccagctagggctcgcgctttggatgctggtcttgttaaaatgggcttcccttacactcca
cctgcaacccaacctgatgctgatcccccaattacagtgtgtatgtgtcacctggaggag
ggtgagggggacggcgaggggggtgcgagtggggaagggcacgtgtgtccgcagtgtcgc
agcaagtattgctcgctaccggcgcagtgtcgcacgtgtggcttgacactcgcctccgcg
ccgcacctcgccaggtcttatcatcatctgtttcctgtagacccttatgaagaagtcaaa
aatgagggtcaggcacaattctgttttggttgtttgagatcttttacggatcttgataaa
cagctgtaccgctgctcgcgctgcagcgagttctactgctgggagtgcgagcacgtggtg
tcgagctcgctgcacgtgtgccccggctgcgcctcgcgtccgcacctctaccagcgcctg
ccgcaggccgactga
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