Melitaea cinxia (Glanville fritillary): 123657620
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Entry
123657620 CDS
T09237
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
123657620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcix03400
]
123657620
Enzymes [BR:
mcix01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
123657620
DNA repair and recombination proteins [BR:
mcix03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
123657620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
TPR_14
RNA_ligase
DNA_ligase_A_C
BRCT
TPR_19
BRCT_2
DNA_ligase_IV
ANAPC3
TPR_16
TPR_6
TPR_1
NatA_aux_su
TPR_8
TPR_2
BTAD
RTT107_BRCT_5
TPR_15
TPR_12
Clathrin
Motif
Other DBs
NCBI-GeneID:
123657620
NCBI-ProteinID:
XP_045449100
LinkDB
All DBs
Position
1:15063516..15081092
Genome browser
AA seq
1321 aa
AA seq
DB search
MDKHQPSTSQQNRQDMDVDNELTNKFLSGEMSFAEYSSEWCNGEDDEEFEELKKNNEDST
QSIQLVEKINIRRRRGTRLSPALMGLMGEANLRFARGDIDMAERMCHEIIKQLPSAAEPY
QTLAQIYEHDIEKSLQFLLLAAHLSHSDAEHWWRLAGMCKQVNDVKQEMICYSQAIKSEP
QNFEAHMKRLEFLTKLEETKYPLNTLNITRVKCYHKIVNCFSSSEGEILMKYAKLAATMY
HSTSEPEKAAEVMFTAYKKCSSLFTLADINILLELLISQKQYHSCIDIFVSNIGVEIEAE
IQTVKNANDEIEEHTNYLSCTTPGNLAVDLKSKLLVCFIHLGAFSLVQNLLNDFLNSDVE
KAGDLYMDIEEAFSSEGHYEMAIKLLEPLVENTNFDLGAVWLKYAECLLKLGREDDAMQA
YYKVLKHVPQHPDACRKLFTILKDRGEITEALKILQQDYKYVVSASLLYEQCKLLKSQND
LLKYLEDATLYPILRLLMPQCERERNAYNLKEKKLGNLLVKVLSLTPQSPDAQKLTNFSS
VHSSSQEGDFAGIAYFVLKSRFVQKSSILTIGDINEILDNIARADVDNKGVLLDEVFSYA
IKKLTALEFKWFLRIILKNLKLEMSENRILATFHPNAVDLYQNCTNLLKVCEELKNSDVP
SGTKSSDEVGVKLFFAVKPMLSERLDVTDVHKLSANITYHVEDKFDGERFQIHMENGIFE
YFSRNSFTFSKNYGRTYDSGSLTPYLKDCFSSDVRNFIIDGEMMGWHKEDQCFGCKGMSY
DIKKITDNSSFRPCFCAFDILYYNGKSLIGSSQNGGMPLNERLEILDSLFIDVPGVIQHS
KRTIVKNSTDILDALNAAIDNQDEGIVVKDVKSYYCPNKRNAGWYKIKPEYTDDTMEDLD
LVVIGADEAENKRQGRAKSFHVACIDVRPDGLARYVCVGRVAGGLSREARARVCSQLERT
WRASRRAPPPPALLFKELPDFWLPPEHSVVFQVRATELVRSAGPGARYTLRFPRVVRVRS
DKPAADAMTLQEFDKLVDTRSPVIKLSKKRVHESQLNQVSTTLRKRTANVLQVSERFRTK
TAGDVPVVSRALLDRKLCIISDEDDCKKVDLIRIIESHGGRHVENPGPDTWCCIVGKPTP
LAKKRIELQELDIITASWLRSLPISDTSCSLCPLHMLSIKRGTRQQLSVRYDSFGDSYKD
EIDESILKKCLQNMEPSIYLTTKEKLKLDKRLFGDDNPFSFLRSCTLHIIGKPVHVLLAK
MYGASISDDFSTLTHFVIPKDTRSEDLEAYKIKVNAKIVSTEWLKMCFHNKRLVNEMEYL
I
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggataaacaccagcctagtacgtctcaacaaaatagacaagatatggatgtggataat
gagttgaccaataaatttttgagcggtgagatgtcgtttgctgaatattcaagcgaatgg
tgcaacggagaagacgatgaggaatttgaagaattaaaaaagaacaatgaggattccaca
cagtcaatacaattagtagaaaaaatcaacatcagaagacgcagaggaacacgtttatct
ccagctctgatggggttaatgggtgaggcaaatttacgatttgcacgtggagatattgat
atggctgaacgaatgtgccatgaaattatcaaacaattaccttctgctgcagaaccatac
caaacattagcacaaatatatgaacatgatatcgaaaaatctttgcagtttttattatta
gctgctcatttgagtcactcagatgcagagcattggtggagactggctggaatgtgcaaa
caagtgaatgatgtaaaacaagaaatgatttgttatagtcaggcaataaaatctgaacca
caaaattttgaggctcatatgaaaagacttgaatttctaacaaaattagaggaaactaaa
tatccactcaacactttaaatattacaagagtaaaatgttatcataagatagttaattgt
ttttcatcaagtgaaggagaaattttaatgaagtatgcaaaactggcagccactatgtat
catagtacttcagaacctgaaaaggcagctgaagttatgtttacagcatataagaaatgc
tcgtcactattcacccttgcagatataaatatattactcgagttacttatttcacaaaaa
caataccactcatgtatagatatctttgtatctaatataggtgttgaaattgaagctgaa
atacaaacagtcaagaacgctaatgatgaaatagaggagcatactaattacttaagttgt
accacacctggtaatttggctgtggatttgaaaagtaaattattagtatgtttcattcac
ttaggagctttcagtcttgtacaaaatttattaaatgattttttaaatagtgatgtcgaa
aaagctggagacctttatatggatatagaggaagctttttcatcagagggtcattatgag
atggcaattaagctactggagcctctcgtagaaaatactaattttgatctaggagctgtt
tggcttaaatatgcagaatgcttactcaaattgggcagagaagatgacgctatgcaagca
tactacaaagtattaaaacatgtaccacagcaccctgatgcttgtagaaaacttttcaca
attttaaaagaccgaggtgagataacagaagcattaaaaattttacaacaagattataag
tatgtagttagtgctagtttattgtatgaacaatgtaagttgttaaaaagtcaaaatgat
ctactaaaatacttagaagacgctacgttgtatccaattttgaggttactgatgccacag
tgtgagcgggaaagaaatgcgtataatttaaaggaaaaaaagcttggaaacttgttagta
aaagttttatcactgactccgcagtcaccagatgctcaaaaattaacaaacttcagttcc
gttcacagttcatcccaggagggtgatttcgctggcatagcatattttgttttgaaaagt
agatttgttcagaagtcgtcaattttaacaataggtgatattaatgaaattcttgacaat
attgcgagggccgatgtcgataataaaggagtgcttttggatgaagtctttagctatgct
ataaaaaaattaacagcactggaattcaaatggttcttgagaattatactaaaaaactta
aaactagaaatgagtgaaaatcgaatattagcaacttttcacccaaatgcagtggatctt
tatcaaaactgtacaaacctactgaaggtctgtgaggaattaaaaaacagtgatgttccg
tctggaactaagagttcggatgaggtcggtgttaagttgttcttcgctgtgaaaccgatg
ctgtctgaacgactggacgtgacagatgttcataagctttctgctaatatcacgtaccac
gtagaagacaaatttgatggcgagaggttccagatacacatggaaaatggtatattcgaa
tatttttcgaggaacagcttcacgttttcaaaaaattatggaagaacttatgattctgga
tcattgacgccatacttaaaagactgcttttcgtctgatgttcgtaattttattatagac
ggtgaaatgatgggatggcataaggaagatcaatgctttggatgtaaaggaatgtcatac
gatatcaagaagataacggataattcatcgtttcgtccatgtttttgcgctttcgatatt
ttatattataacggaaaatcgctcattggttcttcgcagaatggcggcatgccactgaat
gagagactcgagatattggactcactgttcattgacgtacctggcgtaatacaacacagc
aaacggactattgttaaaaacagtacagacatcttggacgccttgaacgccgccatcgac
aaccaagacgagggtatcgttgtcaaagatgtgaaatcatattactgtcccaacaagcgc
aacgcgggttggtacaaaattaaacccgagtacaccgacgacactatggaggatttggat
ttagtagtaattggtgccgatgaagctgaaaacaaaaggcagggccgcgctaagagcttt
cacgttgcttgtatcgatgtcaggccagacgggctggcgcgctacgtgtgcgtggggcgc
gtggcgggcgggctgtcgcgcgaggcgcgcgcgcgcgtgtgctcgcagctggagcgcacg
tggcgcgcctcgcgccgcgcgccgccgccgcccgcgctgctcttcaaggagctgcccgac
ttctggctgccgccggaacactccgtcgtcttccaggtgcgtgccacagagctggtccgc
agcgcgggccccggcgcgcggtacacgctgcgcttcccgcgcgtcgtgcgcgtgcgcagc
gacaagcccgccgccgacgccatgacgctgcaggagttcgacaaactcgtcgacacaaga
agtccagtaatcaaattgagcaaaaagcgtgtgcacgagtctcaactaaatcaagtttcg
acaacgcttcgcaaacgtaccgcgaacgtgctgcaagtttccgaacgattccgaacgaaa
acggccggcgatgtaccagttgtttccagggctctactggataggaaactgtgcatcatt
tctgatgaagacgactgcaagaaagtcgacttgatacgaattatagagtcgcacggtggg
agacatgttgaaaatcctggtccagacacgtggtgttgcatcgttgggaaaccgacgcct
ttagccaagaaacgaatagagttacaggagttggatataataactgcctcctggcttcgc
tcgctccccatctcggatacgtcttgctccttgtgtcctttacatatgttgtctatcaag
agaggcacaagacagcagttaagcgtaaggtacgattcgttcggagacagctacaaggat
gaaatagatgaaagtattttgaagaaatgtttgcaaaatatggaaccatcaatatattta
acaacaaaggagaaactgaaactagataaacgtctgttcggcgatgacaatccattctcg
ttcctgagaagctgcacgttacacattataggaaagcctgtacacgtgttattagcgaaa
atgtacggagccagcatcagcgatgatttctcaactttgacccattttgttatacctaaa
gatacaaggagtgaagatttagaagcttataaaataaaagtaaatgcaaaaatagtatct
actgagtggttgaagatgtgctttcataataaaagacttgtgaatgaaatggaatattta
atttaa
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integrated database retrieval system
