Melitaea cinxia (Glanville fritillary): 123658871
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Entry
123658871 CDS
T09237
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mcix
Melitaea cinxia (Glanville fritillary)
Pathway
mcix03013
Nucleocytoplasmic transport
mcix03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcix00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123658871
03015 mRNA surveillance pathway
123658871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcix03019
]
123658871
Enzymes [BR:
mcix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123658871
5.6.2.5 RNA 5'-3' helicase
123658871
Messenger RNA biogenesis [BR:
mcix03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123658871
mRNA cycle factors
Common to processing body (P body) and stress granule
123658871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
AAA_16
Helicase_RecD
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
123658871
NCBI-ProteinID:
XP_045450116
EnsemblRapid:
ENSMCXG00005016437
LinkDB
All DBs
Position
13:complement(5878177..5887785)
Genome browser
AA seq
1037 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEGDLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGITSSNQ
VNGLGRADLNSKVSTVANAIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAHNPGSHFMSTSMFDAREAMVPGSVYDRARPLRDPLAYVGPERAALLHAPVPPAAFAS
HRGLRLPPTNQRSGRKRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLL
SQDSTYQGGFRARCSQY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtacggtccaagctctcaaacgctgacatttttggataccgaggaa
ggagatcttatcggtgctgacacccaaggctctgaattcgaatttaccgatttcactctt
ccatcacaaagtcaaacacaggcatctcaacatgaccatggaataacgtcatctaatcaa
gtgaacggcctcggtcgggcagatcttaattcgaaagtttcaaccgtagctaatgctata
gcggaattacagtttgaggaagaggatgaagcactgtacagcagcaaagaactgccagat
catgcgtgcaaatactgcgggattcacgaccctgccaccgtcgttatgtgcaatatatgc
aacaaatggttctgtaatggacgaggaaacacttcaggatcgcacattattaaccatctt
gtgagagccaagcacaaggaagcagcactgcaccgtgatggacctctaggggaaacatta
ctggaatgttactcttgcggtgctcggaatgtatttgtccttggctttattcctgcaaag
gctgattctgttgtagtacttctttgccgccaaccttgtgcagcccaaagttccctgaaa
gatatgaactgggatcaagaacagtggaagcctttaatttccgaccgtgcatttttgtca
tggcttgtgaaagtaccatcagaggccgagcaaatgagagctagacaagtgacaccacag
cagataggacgccttgaagaactttggcgtgataatgttgatgctacttttcaagattta
gaaaaacctggagttgatgaagagccgcaccaagttctgctaagatatgaagacggatac
caatatcagaacatatttggtcctcttgtgaaattggaagctgactatgataaaagactc
aaggagtctcagacgcaggaaggaatagaagttcgctgggacgttggtctcaacaaaaag
accattgcttactttacactagccaagaccgatagtgatatgaagctaatgcatggagat
gaattgcggctaagatatgttggtgaacttcacaaagcttggtctggtgttggtcatgtg
atcaaagtaccagacaactacggagatgatgtcgggcttgagttgaaaagtggagcgggt
gcaccacttgattgtacttctaattttgtagtagacttcatttggaaaagtacttctttt
gacagaatgcagctggcacttcgtaaatttgctgtagatgattcatctgtttctggctac
atttaccgacgcctcttaggccatgaagttgaagaagtactgtttcgggtgcacttacca
aaacactttagtgcaccaaatctacccgacctgaatagatctcaggtatatgctgtcaaa
catgcacttcagcggcctctttctttgattcaaggaccaccaggaactggtaaaactgtt
acatcagcaacaattgtgtatcagctcgttcgacaaaacggtggccccgttctcgtatgt
gcaccatcgaatactgccgttgatcaacttactgaaaaaattcatagaacaggacttaaa
gttgtccgtctttgtgcaaaatctagagaagccatggagtcatccgtttccttcctagca
ttacatgagcaagcccgtgctctgggttcagcggatagtgagcttcgtaagttgacaaga
ttgaaagaggaagctggggagttgtccgctgcagatgaaagacgatacagagcactccgt
agagctgcagaacggcgacttctcgatgctgcagacgttgtctgtaccacttgtgtgggt
gcaggagacccgagagttgctcgaatgcgttttcaatccatccttatagatgaaggcatg
caatctactgagcctgaatgtatggtaccagttgtacttggtgcaaggcaacttatcctt
gtcggtgatcattgccagttgggccctgttgtgatgtgcaaaaaggctgctaaagcaggt
ttgagtcaaagcctattcgagcgacttgtggtccttggaattcgtcctttcagactagag
gtacaataccgtatgcaccctgaactttcgcgttttccatctgatttcttttatgaaggt
tctctccaaaacggagttagtgccgaagaaagacgtttacataaaattgattttccttgg
ccgagaccagatagacctatgttcttttacgtcactcaaggtcaagaggaaatagctgga
tcgggaacgtcttacttaaaccgtacagaagctgccaatgtagaaaaattaacaactcgc
ttcttaaaagctggtgtccgtccagaacaaatcggtattatcactccttatgaagggcag
agatcgtatcttgtacaacatatgcagtatcaaggaagcttacatgccaaactttatcaa
gaaatcgaagtagccagcgtagacgccttccagggcagagaaaaagatattattatcatg
tcttgtgtgcgttcaaacgaacatcaaggtataggatttttgagcgatcctcgtcgtctc
aatgtcgctctaactcgcgcgaaatacggtttgatagtagtcggaaatcctaaggttctc
agtaagcagcccctatggaaccatctgctcgcattctacaaggagcgtcgcgttcttaca
gaggggcctctgtctaacctcaaggagtcagcgatacagtttgcaaaacctaagaagctg
gtgaacgctcacaatccgggctcgcactttatgtcgacgtcgatgttcgacgcccgcgag
gcgatggtacctggctccgtatacgaccgcgctaggccgctacgggacccgttggcgtac
gtgggccccgagagggccgctctacttcacgccccggtaccgcccgcagccttcgcttcg
caccgcggtcttcgcctaccgccgactaaccagagaagtgggagaaaacggccgcctcgt
ctctcacaggagccgctgtcgcaacaacccccgctgtcgctatcgcagggcgcctcgcag
cccgacttcagccaggagtcggcggcgccggactgcccgtcgcagcccgatgggctcctg
tcgcaggactccacgtaccagggggggttccgcgcgcggtgcagccagtactga
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