Mastomys coucha (southern multimammate mouse): 116068887
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Entry
116068887 CDS
T07224
Symbol
Lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116068887 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcoc03400
]
116068887 (Lig4)
Enzymes [BR:
mcoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116068887 (Lig4)
DNA repair and recombination proteins [BR:
mcoc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116068887 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
HTH_Tnp_Tc3_2_like
Motif
Other DBs
NCBI-GeneID:
116068887
NCBI-ProteinID:
XP_031194850
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MASSQTSQTVAAHVPFADLCSTLERIQKGKDRAEKIRHFKEFLDSWRKFHDALHKNKKDV
PDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDAQKLLNYRTPSGTHT
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNELLDLVASNNSGKRKDQVKKSLLQLITQSSA
LEQKWLIRMIIKDLKLGVSQQTIFNIFHNDAVELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAVADVERVEKDMKQQSFYIETKLDGERMQMHKDGTLYRYFSRNGYNYTD
QFGESPQEGSLTPFIHNAFRTDVQVCILDGEMMAYNPTTQTFMQKGVKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYDILCSTFTPIQGRIEIVQKTQAHTKKEVVDALND
AIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGSRGGMM
SHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFHRKSPPSSILC
GTEKPEVYIEPQNSVIVQIKAAEIVPSDMYKTGSTLRFPRIEKIRDDKEWHECMTLGDLE
QLRGKASGKLATKHLHVGDDDEPREKRRKPISKMKKAVRIIEHLKAPNLSNINKVSNVFE
DVEFCVMSGLDGHPKSDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVRNIISSGRHDV
VRPEWLLECFKTKTCVPWQPRFMIHMCPSTKQHFAREYDCYGDSYFVNTDLDQLKEVFVG
IKPSEQQTPEEMAPVIADLEGRYSWDHSPLSMFRHYTIYLDLYAVINDLSSKIEATRLGV
TALELRFHGAKVVSYLSEGVSHVIIGEDQTRVTDFKIFRRTLKKKFKILQERWVTDSVDK
CALQEENQYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcacaaacttcacaaactgttgcagctcatgtcccctttgcagacttatgc
tccacattagaacgaatacagaaaggcaaagaccgggcagaaaaaatcaggcacttcaag
gagtttttagattcttggagaaaatttcatgatgctcttcataagaacaaaaaggatgtt
ccagactctttttacccagcaatgagacttattctccctcaattagaaagagagaggatg
gcttatggaatcaaagagaccatgctcgctaagctttacatcgaattgctgaatttacca
agagaaggcaaggatgctcagaagctcctgaattaccgaacccccagtggaactcacacg
gacgctggggactttgcgatgattgcgtactttgttctgaagccaaggtgcttacagaaa
ggaagcttaaccatacagcaggtaaatgaactcttagacttagttgccagcaataactct
ggcaaaagaaaagaccaagtgaaaaagagccttcttcagttaataacccagagttcagca
ctcgagcaaaagtggctgattcgcatgattatcaaagacttaaagcttggtgtcagtcaa
caaacgatatttaacattttccacaatgatgcggttgagttgcacaacgtcaccacagac
ctggaaaaggtctgtaggcagctacatgacccctctgtagggcttagcgacatctccatc
actttgttttctgcctttaagccaatgctagccgctgtagccgacgtggagcgtgtagag
aaggacatgaagcagcagagtttctacatcgaaactaaactcgatggtgagcgcatgcag
atgcacaaagatggcacactgtaccggtacttctccagaaatggttacaattacaccgat
cagtttggtgaatcaccacaggaaggctcgctcaccccatttattcacaatgcattcagg
acagatgtacaagtgtgcatccttgacggtgagatgatggcctacaatccaaccacacag
actttcatgcagaagggggtcaagtttgatatcaaaaggatggtcgaagattctgacctg
cagacatgttactgtgtttttgatgtgctgatggttaataataagaagctaggacgtgag
actcttaggaagaggtatgacatcctttgtagcaccttcacacccattcaaggtcgaata
gaaatagtgcagaaaactcaagctcatacaaagaaggaagtagtcgatgcattaaatgat
gccatagacaagagagaagaggggatcatggttaaacaccctctgtccatttacaagcca
gacaaaagaggtgaagggtggctaaagattaaaccagagtatgtcagtggactaatggat
gaattagacctcctaattgtggggggctactggggtaaaggttcacgaggtggcatgatg
tctcattttttgtgtgcagtggcagagacgccacctcctggtgacaggccatctgtattc
cacactctgtgccgtgttgggtcaggttacaccatgaaagaactctatgacctgggcttg
aaattggcaaaatactggaagccttttcatagaaaatctccaccaagtagcattttgtgt
ggcacagagaagccagaagtgtacatcgagcctcagaactctgtcatcgttcagatcaag
gcagcagagatcgtccccagtgacatgtacaagactggctcgaccttgcgcttcccacgc
attgagaagatcagagacgacaaagagtggcatgaatgtatgacactgggtgacttggag
cagctgagggggaaggcatcagggaagctggccacaaaacacctccatgtaggtgatgat
gatgaacctagagaaaaaaggcggaaacccatctccaagatgaagaaagcagtcagaatc
atcgaacacttaaaagcacctaacctgtctaacataaacaaagtttctaatgtatttgaa
gatgttgagttttgtgttatgagtggattggatggtcatccaaagtctgacctagagaac
agaattgcagaatttggtggttacatagtacagaatccagggccagatacatactgtgtg
attgcaggctctgagaacattagagtgagaaacatcatttcttcaggtagacacgatgtt
gtcaggcccgagtggcttttagagtgttttaaaacaaaaacatgcgtgccatggcaacct
cgctttatgattcacatgtgcccatcaacaaagcagcattttgcccgtgaatatgactgc
tacggtgatagctattttgttaacacagatttggatcaactgaaagaagtgtttgtagga
attaaacccagtgagcagcagactcctgaagaaatggcccctgtgattgcagacttagaa
ggccgttattcctgggatcactctcctctcagtatgtttcgacattataccatttatttg
gacttgtatgctgttattaatgacttgagttccaaaattgaagccacgagattaggtgtt
acagcacttgagctgcggtttcatggagcaaaggtagtttcctacttatctgaaggggtg
tctcacgttatcattggggaagatcagacacgagttactgactttaaaatattcagaaga
acgcttaagaaaaagtttaaaatcctgcaagaacgttgggtgaccgattcagtagacaag
tgtgcactgcaggaggaaaaccagtatttgctttag
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