Mastomys coucha (southern multimammate mouse): 116081683
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Entry
116081683 CDS
T07224
Symbol
Ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116081683 (Ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcoc03041
]
116081683 (Ddx46)
Enzymes [BR:
mcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116081683 (Ddx46)
Spliceosome [BR:
mcoc03041
]
Complex A
U2 snRNP components
U2 related factors
116081683 (Ddx46)
Complex B
116081683 (Ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
FAM176
Motif
Other DBs
NCBI-GeneID:
116081683
NCBI-ProteinID:
XP_031214141
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGSKSKKAENRSRS
KEKAEGGDSSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEDEELDPLDAYMEEVKEEVK
KFNMRSVKGGAGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQSQAIPAVMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKSGACKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQ
LAEKINAKLNYVPLEKQEEERQEGGQSESFKRYEEELEINDFPQTARWKVTSKEALQRIS
EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNS
YQPTNKGRYKVL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtctcgccactaccgcaaacggtcagcatcccgaggtcgctctggaagt
cggtctaggagtcgctcaccctctgacaaaagaagcaagcgtggagatgacaggcgctct
aggagtagagatagagaccgaaggagagagaggtctcggagtagagacaaaagaagatct
cggtcaagggacaggaaacgcctgaggcgttccagaagcagagagcgtgacagaagccga
gagcgaagaagatctcgcagccgagatagaagacgctcaaggagccgaagccgaggcagg
cgatcccggtcctccagccctggcagcaaaagcaagaaggcggagaataggtctaggtcc
aaagagaaagcagaaggtggggacagctccaaggagaagaaaaaggacaaggatgacaag
gaggacgagaaagagaaggatgccgggaactttgaccagaataagctggaagaagaaatg
agaaaacgaaaagaaagagttgaaaaatggcgagaagagcagcgtaaaaaggcaatggag
aacataggggagctgaagaaggagattgaggagatgaagcaggggaagaagtggagcttg
gaagatgatgatgatgatgaagatgaccctgctgaggccgagaaggaaggcaatgaaatg
gaggacgaggagctggacccattagatgcctacatggaagaagtgaaagaagaggtaaaa
aagtttaacatgaggagcgtgaaaggcggcgcaggaaatgagaagaagtctgggccaaca
gtcacgaaagttgttactgtggtaacaaccaagaaagcagtggtagattccgataagaag
aagggagagctgatggagaatgaccaggacgccatggagtactcctcagaggaggaggaa
gttgaccttcagacggccctcacaggctaccagaccaaacagagaaagctgctagaaccg
gttgatcatggaaaaattgaatatgagccattcagaaaaaacttttacgttgaagttcca
gaattagcaaaaatgtctcaagaagaggtgaatgtgtttcgattggaaatggaaggcatt
acagttaaaggaaaaggttgccccaaaccaattaaatcatgggtccagtgtggaatttcc
atgaagatactaaattccctcaaaaagcatggctatgaaaaaccgacaccaatccaaagc
caagcaattcctgctgtaatgtcgggacgggatttgatcggcattgccaagacaggaagt
ggaaaaaccattgcttttcttttgcccatgtttagacacatcatggatcagaggtcatta
gaagaaggagagggaccaatagctgtcatcatgactccaactcgagaactggctttacaa
atcactaaagaatgtaagaagttttcgaagaccttgggactgagagtggtctgtgtgtat
ggagggacaggaatcagcgagcagattgctgagctgaaacgaggtgctgaaattattgtt
tgcacacctggtcgaatgattgacatgttagcagctaacagtggtcgggtcacaaatctt
cgaagagtgacgtatgttgttttagatgaagcagacagaatgtttgacatgggttttgaa
ccacaggtcatgcgcattgtggataatgttcgccctgaccgacaaacagttatgttttca
gccactttccctagagctatggaggccctggcccgcaggatcctgagcaaacccattgaa
gttcaggttggaggcaggagtgtggtttgctcagatgtggaacaacaagtgattgtgatt
gaagaagaaaagaaattcttgaaattgctggagcttttaggccattatcaggagtcagga
tctgtcattatatttgtggataagcaggaacatgccgatggtcttctgaaggacttgatg
agagcatcgtacccttgcatgtctcttcacggaggtattgaccagtatgacagggacagt
atcataaacgactttaagagtggagcctgcaagcttcttgttgccacatctgttgcagct
cgtggtctcgatgtgaaacatctaattcttgtagtgaattacagctgtcccaatcattat
gaggattatgtgcacagagctgggcggactggaagagcgggcaacaagggttacgcctac
accttcatcacagaggatcaagctcggtatgctggtgacatcattaaagctcttgaattg
tcagggacagcagtgcctcctgacctagaaaaactctggagtgacttcaaagatcagcaa
aaagctgaaggaaaaataattaaaaagagtagtggcttctctggcaagggattcaagttt
gatgaaacagaacaggctttagccaatgagaggaaaaagctacagaaagctgctcttggc
ctgcaggattctgacgatgaggatgctgcagtggatattgatgaacaaattgaaagcatg
tttaattcaaagaagagagtaaaggacatggctgcccccggcacgtctagtgtgcctgct
ccgactgcaggcaatgctgagaagctagaaattgccaagagattggcgctcaggatcaac
gctcagaagaacctgggcatcgagtctcaggtagatgtgatgcagcaggccaccaacgcc
atcctcagaggtgggactattctggctcccaccgtgtctgcgaaaaccattgcagagcag
cttgctgaaaagatcaatgccaagctcaattacgtgcctttggagaaacaggaagaagag
agacaggagggtgggcagagtgaatctttcaagagatacgaggaagaattagaaattaat
gacttcccacagacggcgaggtggaaagtcacctctaaggaagccttgcagagaatcagt
gaatactctgaagctgccatcacaatcagagggacctacttccctcctggcaaggagcct
aaggaaggagagcgcaagatctacctggcgatcgaaagtgccaatgaactggctgtgcag
aaagccaaggcagagatcaccaggctcataaaagaagaactgatccgactgcaaaattca
taccagccaaccaacaaaggacgatacaaagtattataa
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