Mastomys coucha (southern multimammate mouse): 116086828
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Entry
116086828 CDS
T07224
Symbol
Thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03013
Nucleocytoplasmic transport
mcoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116086828 (Thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
116086828 (Thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcoc03019
]
116086828 (Thoc1)
03041 Spliceosome [BR:
mcoc03041
]
116086828 (Thoc1)
Messenger RNA biogenesis [BR:
mcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116086828 (Thoc1)
Spliceosome [BR:
mcoc03041
]
Complex C
Other components
EJC/TREX
116086828 (Thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116086828 (Thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
HsdM_N
Motif
Other DBs
NCBI-GeneID:
116086828
NCBI-ProteinID:
XP_031220809
LinkDB
All DBs
Position
Unknown
AA seq
657 aa
AA seq
DB search
MSPTPALFSLPEARTRFTKSTREALNNKNIKPLLNAFSQLPGSENEKKCTLDQAFRGVLE
EEIINHSACENVLAIISLAIGGVTESVCTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERASDTKPTRVVRKRAAPE
DFLGKGPNKKILIGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ESEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENESPDVRRDKPVTGEQIESFANKLAEQWKILAPYLEIKDSDIR
QIECDSEDMKMRAKQLLVAWQDQEGVHATTDNLISALNKSGLSDLAESLTNDTETNS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgacgccggcgcttttcagtttgcccgaggcgcggacgcggtttacgaaatct
accagagaagccttgaataacaaaaatatcaagccattgttgaatgccttcagtcagtta
cctggcagtgaaaatgaaaaaaaatgtaccctggaccaagctttcagaggggttctggaa
gaagaaattataaatcattcagcatgtgagaacgttttagctattatttctcttgctatt
gggggagtaaccgaaagtgtttgtactgcgtccacaccatttgtgctattgggagacgtc
ttggactgccttcctttggatcagtgtgacacaatattcacttttgttgaaaaaaatgtt
gctacttggaagtcaaatacattctattctgctggcaaaaattatttactgcgtatgtgc
aatgatctcctcagaagattgtctaaatctcagaatacagttttctgtggaagaattcag
ctctttttggccaggctttttcctttatctgagaaatcaggtcttaatttgcagagtcag
tttaacctggaaaatgtcactgttttcaatacaaatgagcaggagagcaccctgggtcag
aagcatactgaggatagagaggaggggatggatgtagaagaaggtgaaatgggagatgat
gaggccccaacaacttgttctattcctattgattacaacttgtatagaaaattctggtca
cttcaggattacttcaggaacccggtacaatgctatgagaagatttcgtggaaaactttc
ctcaagtattctgaagaagttttagctgtttttaaaagttataaattagatgatactcaa
gcctccaggaagaagatggaagaattgaaaacaggaggagagcatgtgtacttcgcaaag
tttttaacaagtgagaagttgatggatttacaactgagtgacagtaactttcgtcgacac
atcctgctgcagtatctcattttatttcagtatctcaagggacaggtcaaattcaaaagt
tcaaattatgttttaactgatgagcaatcactctggattgaagatactacaaaatcagtc
taccaactgctatctgaaaacccccctgatggagaaaggttttcaaagatggtagagcat
atattaaacactgaggaaaattggaactcatggaaaaatgaaggttgcccaagttttgtg
aaagaaagagcatcagataccaagcccacaagagtggtgcggaagagagcagccccagaa
gacttcttaggcaaagggcccaacaagaaaatcctgattggaaatgaggagctgacaaga
ctttggaatctctgtcctgacaatatggaagcctgtaaatcagagacaagagaatacatg
ccaactttggaggagttctttgaagaagctattgaacaagcagatcctgaaaacatggtt
gaaagtgaatataaagccgtaaataattcaaattatggatggagagctcttagactctta
gcccggagaagccctcacttcttccagccaaccaaccagcagtttaagagtctaccagag
tatctcgaaaacatggtgataaagctagccaaggaactgccacccccttctgaagaaata
aaaacaggtgaggatgaagatgaggaagacaatgatgctttactaaaggaaaatgaaagt
ccagatgttcggcgagataaacctgtaacaggggagcagatagagtcatttgccaacaaa
cttgctgagcagtggaagattttggctccttacctggaaatcaaagactctgatattagg
cagattgagtgtgacagtgaagacatgaagatgagagccaagcagctccttgttgcctgg
caagatcaagaaggagttcatgcaacaactgataacctgatcagtgcactaaacaagtct
ggattaagtgaccttgcagaaagtctaactaatgacactgaaacaaacagttag
DBGET
integrated database retrieval system
