Mastomys coucha (southern multimammate mouse): 116101660
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Entry
116101660 CDS
T07224
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03030
DNA replication
mcoc03410
Base excision repair
mcoc03420
Nucleotide excision repair
mcoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116101660 (Lig1)
03410 Base excision repair
116101660 (Lig1)
03420 Nucleotide excision repair
116101660 (Lig1)
03430 Mismatch repair
116101660 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcoc03032
]
116101660 (Lig1)
03400 DNA repair and recombination proteins [BR:
mcoc03400
]
116101660 (Lig1)
Enzymes [BR:
mcoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116101660 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
116101660 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
116101660 (Lig1)
DNA replication proteins [BR:
mcoc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
116101660 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
116101660 (Lig1)
DNA repair and recombination proteins [BR:
mcoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
116101660 (Lig1)
NER (nucleotide excision repair)
Other NER factors
116101660 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
116101660 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
BRD4_CDT
Motif
Other DBs
NCBI-GeneID:
116101660
NCBI-ProteinID:
XP_031241249
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MRKKEQERKGETSAANMQRSIMSFFQPTKEGKAKKPEEETASSIREKEPPLKAALKERNR
VVPESDSPVKRPGRKVAQVLSSEGEDEDEAPRIPKVQKPVSDSEQSSSPSPDACPENSPL
FNRSPSMDISPSGFPKRRTARKQLPKRTIQDTLQEQNEDKDKTAKKRKEEEEGTETPTES
LTEAEEVKQKEEKEGDQPIIPPEPTKSPESVTLTKTETIPVCKAGVKQKPQEEEQSKPPA
RGAKTLSSFFAPRKPAVKTEVKQGESGTPRKDETKGTLDPTNYNPSKNNYHPIEDACWKH
GQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPPDLLPVLYLSLSRLGPPQQ
GLELGVGDGVLLKAVAQATGRQLEYIRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTVSG
VFTKFCDIARLTGSASMAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAAL
AQAVSLTPPGQEFPTAVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEH
GLEHLPEHCKLSPGVPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKYDGQRAQIHALEGGE
VKIFSRNQEDNTGKYPDIISRIPKIKQPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKR
KEVDASEIQVQVCLYAFDLIYLNGESLVRQPLSRRRQLLRENFVETEGEFVFTTSLDTKD
FEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIG
AYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLKALVLPTPRPY
VRIDGAVAPDHWLDPSIVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVRKDKQ
PEQATTSDQVASLYQKQSQIQNQQSSDLDSDVEDY
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaaagaacaagagaggaaaggagagacttctgctgccaacatgcagagaagt
attatgtcattttttcaacccacaaaagaaggtaaagcgaagaagccggaggaggagaca
gccagcagcatcagagagaaggaaccccctctaaaggcggcgttgaaggagaggaatcga
gtggtacccgagagtgattctccagtgaagaggccaggaagaaaggtagctcaggtcctg
agcagtgaaggggaagacgaagatgaagcccctagaatccccaaagtccaaaagcctgtg
tcagactctgaacagagctcttctcccagccctgatgcatgtcctgagaacagtcctttg
ttcaaccgcagcccctccatggacatctccccatcaggattcccaaagcgtcgaactgcg
aggaagcagctccccaaacggacaattcaagacactctccaggagcagaatgaggacaaa
gacaaaacagctaagaaaaggaaggaagaagaagaaggaacagagaccccaacagaaagc
ctcacagaggctgaagaggtaaaacagaaggaagaaaaggagggggaccagcccataata
ccccctgagcccacaaagtcccctgagtcagtaaccctgacaaagacagagaccattcca
gtgtgtaaggcaggtgtgaaacagaagcctcaggaagaggaacagagcaaacctcccgcc
agaggtgccaagactctaagcagtttcttcgcacctcgaaaaccagcagtgaaaactgaa
gtcaaacaaggagagtcaggaactccaaggaaggatgagaccaagggaaccctggatcca
acaaattataatccttccaagaataactaccatcccattgaagatgcctgctggaaacat
ggccagaaggtcccttttctcgcggtggcccggacatttgagaagattgaggaggtttct
gctcggctcaagatggtggagacattgagcaacctgctgcgctctgtggtggccctgtcc
cctccagacttgctccctgttctctatctcagcctcagccgcctcgggccaccccagcag
ggactagagctgggtgttggtgatggtgtcctcctcaaggcagttgcccaggccacaggt
cgtcagctggagtacatccgggctgaggtagctgagaagggggatgtggggctggtggcc
gagaacagccgcagcactcagagactcatgctgcctccacctccacttaccgtttctgga
gtctttaccaaattctgtgacattgcccggctcactggcagtgcttccatggccaagaag
atggacattatcaagggcctttttgttgcctgccgccactcagaagcccggttcattgcc
aggtccctaagtgggcggctgcgccttgggctggctgagcagtcagtgctggctgctctt
gcccaggctgtgagcctcacaccccctggccaagaatttcccacagccgtggtggatgct
gggaagggcaagacagcagaggccagaaagatgtggttggaagaacaaggcatgatcttg
aagcagaccttctgtgaggtccctgacctggatcgaatcattcctgtgctgctggaacac
ggcctggaacatctcccagagcactgcaagctgagcccaggggttcctcttaaaccaatg
ctggctcatcccactcgaggtgtcagtgaggtcctgaaacgctttgaggaggtcgacttc
acctgcgagtataaatacgatgggcagcgggcacagatacatgctctggaaggtggagaa
gtgaagatcttcagcagaaaccaggaagacaacacaggaaagtatcctgacattatcagc
cgcatccccaagattaaacagccctcagtcacatctttcattctggacactgaggctgtg
gcctgggaccgggaaaagaagcagatccagccattccaagttctcaccacgcgcaagcgc
aaggaggttgatgcatcggagatacaggttcaagtgtgtctgtatgcttttgacctcatc
tacctcaacggagagtccctggttcgccagcccctgtctcgacgccggcagctacttcgt
gagaacttcgtggagacagagggtgagtttgtcttcactacctccttggacaccaaggac
ttcgagcagattgctgagttcttggagcagtcagtgaaggactcctgtgagggcctgatg
gtgaagactttggatgttgatgccacctatgagatcgccaagaggtcacacaactggctc
aagttgaagaaggactaccttgatggtgtgggcgacactctggaccttgtggtgattggt
gcctacctgggccggggaaagcgggctggccggtatgggggcttcctgttggctgcctac
gatgaggagagtgaagagcttcaggccatatgcaagctgggaactggattcagtgatgag
gagctggaagaacatcaccagagcctgaaggccctggtattgcctaccccacgcccctat
gtgaggattgatggggcagtggccccagaccattggctggacccaagcattgtgtgggaa
gtgaagtgtgctgatctctccctgtctcccatctaccctgctgcacggggcctggtggac
aaagagaaagggatctctcttcgtttccctcggttcattcgtgttcgtaaagacaagcag
ccagagcaggccactaccagtgaccaggttgcctctttgtaccagaagcagagtcagatt
cagaaccaacaaagctcagacttggactccgacgttgaagactattaa
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integrated database retrieval system
