Mycobacterium cookii: MCOO_21130
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Entry
MCOO_21130 CDS
T07035
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcoo
Mycobacterium cookii
Pathway
mcoo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MCOO_21130 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcoo03400
]
MCOO_21130 (mfd)
Enzymes [BR:
mcoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCOO_21130 (mfd)
DNA repair and recombination proteins [BR:
mcoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MCOO_21130 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
LSDAT_prok
DUF3638
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBX46098
UniProt:
A0A7I7KX63
LinkDB
All DBs
Position
complement(2274799..2278419)
Genome browser
AA seq
1206 aa
AA seq
DB search
MTAPGPDCVVTPIAGLVELALRTPTLQQLVDLSAAQPDDLTLVGPASARLFVTCALARRG
PLLVVTATGREADDLTAELRGVYGDAVGMFPSWETLPHERLSPGVDTVGARMMLLRRLAH
PDDTRLGPPLQVVVTAVRSLLQPMVSGLGRLEPLTMTVGDEMVFEDVISRLVELAYTRVD
MVGRRGEFAVRGGILDVFAPTAEHPVRVEFWGDEVSEMRMFAVADQRSIPEISIDTVIAV
ACREVLLTDDVRARAAELAGHQPPAEHGVTGGVGDMLAKLAEGIPVDGMEALLPVLRPDG
VALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLDASWSVAAVGGDSPIDVEQLGGS
GFRELDEVQAAARQSGHPWWTLSQLSDESAIELDIRTAPSARGHQRDIDELFAMLRAHVS
TGGVAAVVAPGTGTAHRVVEQLAESETPATMLEPGAEPRPGVVGVLKGPLHAGVVFPGAG
LVIVTETDLTGNRMAASEGRRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTVG
GARREYLVLEYASSKRGQNQTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKA
RKAVREIAGELVSLYAKRQASAGHAFGPDTPWQAEMEDAFGFTETVDQLTAITEVKSDME
KPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFP
VRIKGLSRFTEATESRAVLDGMADGTVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVE
HKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQ
VAAALRRELLRDGQVFYVHNRVSSIDAAAARVRELVPEAKVAVAHGQMHEELLETTVEGF
WNREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFMYP
QHVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVR
LVGEAVEAYRAAADGQTVVSAEEPKDVRIDLPVDAHLPPDYIPSDRLRLEGYRRLAAAAD
DAAVDAAVEELTDRYGALPETAERLIAVARLRLLCRAAGITEVSAPSEATVRLAPMTLPD
SAQVRLARMYPGARYRATTSTVLVPIPRAGGVGAPRIRDLELVRMVADLVSALDAKQGEQ
TARRGS
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggccggattgcgtagttaccccgatcgcggggttggtggagttggcg
ctgcggacgccgacgctccagcagctcgtcgacctttccgcagctcaacccgatgatttg
acgttggtcgggccggccagcgcgcggctgttcgtcacctgcgcgttggcccggcggggc
ccgttgctggtggtcaccgccaccggccgcgaagccgacgacctcaccgcggagctgcgc
ggtgtctacggcgacgccgtagggatgttcccgtcctgggagacgctgccgcacgaacgg
ctgtcacctggtgtcgacaccgtcggcgcacgaatgatgttgctgcgcaggcttgcccat
ccggacgacacccggctgggcccgccgctgcaggtggtggtcaccgcggtgcgctcgttg
ttgcagccgatggtgtccgggttgggccggctggagccgctcactatgaccgtcggcgac
gagatggtcttcgaagacgtcatctcgagactggtcgagctcgcctacacccgggtggac
atggtcggccgacggggcgaattcgcagtacgcggcggcattctcgacgtcttcgcaccg
accgccgagcacccggtgcgcgtcgagttctggggcgacgaggtcagcgagatgcggatg
ttcgcggtcgccgaccagcgttcgatcccggaaatcagcatcgacaccgtgatcgcggtc
gcctgtcgcgaagtgttgctgaccgacgacgtgcgggcgcgggccgccgaactggccgga
caccagccgccggccgaacacggcgtcaccggcggcgtcggcgacatgctggccaagctg
gccgaaggtatcccggtcgacggcatggaggccctgctgccggtgctgcggcccgacggt
gtggcgttgctgaccgatcaactggcggagggcacgccggtgctggtctgcgacccggaa
aaggtccgcacccgcgcggccgacctgatcaagaccggccgcgaatttctcgacgcgtcg
tggtcggtggcggcggtcggcggcgattcgcccatcgacgtcgagcaactcggcggctcg
ggtttccgtgaactcgacgaggtccaggccgccgcgcggcaatccggtcacccgtggtgg
acgctgagccagctgtccgacgagtcggcgatcgagttggacatccggaccgcgccgtca
gcccgcggccaccagcgcgacatcgacgaactcttcgcgatgctgcgcgcgcacgtgtcg
accggcggggtcgccgccgtggtcgcgcccggtaccggaaccgcgcaccgcgtcgtcgag
cagctggccgaatccgagactcccgcaacgatgttggagccgggagcggagccccgaccg
ggagtggtcggtgtgctcaaaggcccgctgcacgccggggtggtgttcccgggtgccggg
ctggtgatcgtcaccgagaccgatctgaccggcaaccggatggccgcttccgaaggcagg
cgccttgccgccaaacgtcgcaacaccgtcgacccgctggcgctgaccgcgggtgacctg
gtggtgcacgaccagcacggcatcgggcggttcgtcgagatgaccgagcgcaccgtcggc
ggtgcgcggcgcgagtatctggtgctggagtacgcgtcgagcaaacgtggccagaaccag
accgacaagctctacgtgccgatggattccctggatcagctgtcgcgctacgtcggtggc
caggcgcccgcgctgagcaggctcggcggcagcgactggaccaacacgaaaaccaaggcc
cgcaaagcggtccgggagatcgcgggcgaactggtgtcgctgtacgccaagcggcaggcg
agcgcgggccacgcgttcggtccggacactccgtggcaggccgaaatggaagatgcgttc
ggcttcaccgaaacggtggaccagctgaccgcgatcaccgaggtcaagtcggacatggag
aagccggtgccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatc
gcggtgcgggcggcgttcaaggccgtgcaggacggcaagcaggtcgcggtgctggtgccg
accaccttgctcgccgaccagcatctgcagactttcaccgcgcggatggccggctttccg
gtccggatcaagggcctgtcccggttcaccgaggcgaccgaatcccgcgccgtgctcgac
ggtatggccgacggcaccgtcgacatcgtgatcggcacgcatcggttgctgcagaccggg
gtgcgatggaaggacctcgggctggtggtcgtcgacgaggagcaacgcttcggcgtcgag
cacaaggaacacatcaagtcgctgcgcacccacgtcgacgtgttgacgatgagcgccacc
ccgattccccgcacgctggagatgagcctggccgggatccgggagatgtcgacgatcctg
accccgcccgaagagcgctacccggtgctcacctacgtcggcccgcaggacgacaagcag
gtcgccgcggccctgcgccgggaactgctgcgcgacgggcaggtcttctacgtgcacaac
cgggtcagctcgatcgacgcggcggcggcgcgggtgcgcgagctggtgcccgaggccaaa
gtcgctgtcgcacacggccagatgcacgaagagctgctggagaccaccgtcgaaggattc
tggaaccgtgagttcgacattctggtctgcaccacgatcgtcgaaacaggcctggacatc
tccaacgccaacacgctgatcgtcgagcgtgccgacaccttcgggctgtcgcagctgcac
cagctgcgcgggcgggtcggccgcagccgggaacgcggctatgcctacttcatgtatcca
cagcacgtgccgctgaccgagaccgcctacgaccgcctcgccacgatcgcgcagaacaat
gagctgggcgctggaatggccgttgccatgaaagacctcgagatccgcggcgcgggcaac
gtgctcggcgtcgagcagtccgggcacgtcgccggcgtcggcttcgacctctacgtccgt
ctggtcggcgaggcggtcgaggcgtaccgagcggcggccgacgggcagaccgtcgtcagc
gccgaagagcccaaagacgtccgcatcgatctgccggtcgacgcgcacctgccgcccgat
tacattcccagcgaccggctacggctggagggctatcggcggctggcggccgcagccgac
gacgcggccgtcgatgccgcggtcgaagagctgaccgaccgctacggcgcgttgccggag
accgccgagcggctgatcgccgtcgcgcggctgcggctactgtgccgggcggccggcatc
accgaagtgtcggcgccgtcggaggccacggtgcgactggcaccgatgacgctgcccgac
tccgctcaggtgcgcctggcgcggatgtatccgggtgcgcgttaccgcgccaccacctcg
acggtgctggttccgattccgcgcgccggcggtgtcggcgcaccccgaattcgtgacctc
gagttggtgcgaatggtggctgatctggtgtcggcgctggatgctaagcaaggagaacag
acggcgaggaggggctcttga
DBGET
integrated database retrieval system
