Mycobacterium cookii: MCOO_22860
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Entry
MCOO_22860 CDS
T07035
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mcoo
Mycobacterium cookii
Pathway
mcoo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MCOO_22860 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcoo03400
]
MCOO_22860 (ligD)
Enzymes [BR:
mcoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MCOO_22860 (ligD)
DNA repair and recombination proteins [BR:
mcoo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MCOO_22860 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BBX46271
UniProt:
A0A7I7KXK9
LinkDB
All DBs
Position
complement(2469730..2471994)
Genome browser
AA seq
754 aa
AA seq
DB search
MARVKLTNADKVLYPATGTTKSDIFDYYTGIAEFMVPHIAGRAATRKRWPNGVNQSSFFE
KQLAASAPDWLPRASVVHKSGTTTYPIIDSADGLAWIAQQAALEVHVPQWRFVAEWTRKG
EEIKPGPATRLVFDLDPGEGVTMAQLAKVARAVRDLIADIGLTTFPLTSGSKGMHLYCPL
DKPVSSRGAVVLAKRVAQQLETTMPKLVTATMTKSLRAGKVFVDWSQNSGSKTTVAPYSL
RGREHPTVAAPRSWEELDDTKLRQLRYDEVLKRVQRDGDLLAPLDADVRIPDRLTKYRSM
RDASKTPEPVPSTKPAAGQGNSFVIQEHHARRLHYDFRLERDGVLVSWAIPKNLPETTAV
NHLAVHTEDHPLEYGNFEGTIPKGEYGGGKVVIWDSGTYDTEKFRDSGEKGEVIVTLHGR
RIRGRYALIQTNGDQWLAHRMKDQHVFEFDELAPMLTTHGSVAKLTASQWAFEAKWDGYR
LLVDADHGEIRLRSRSGRDITKEFPQLRSVADDLTEHHAVLDGEVVALDASGVPSFSEMQ
NRARATRIEFWAFDLLYLDGRSLLRARYRDRRQLLETLATGAKGLIVPDLLSGDGAQALE
YSRKHQWEGVIAKKRDSTYQPGRRSASWIKDKYWNTQEVVIGGWRAGAGGRSSGIGSLLM
GIPGADGLRFVGRVGTGFTERDLANLKKTLKPLHTNESPFDARLSTQDAKGVTFVQPTLV
GEVRYSEWTSDGRLRQPSWRGLRPDKEPGEVVRE
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgggtgaaacttacgaacgccgacaaggtgctgtaccccgcgacgggaaccacc
aagtccgacatcttcgactactacaccggcatcgcggaattcatggtgccgcacatcgcc
ggtcgcgcggccacccgaaagcgttggcctaacggcgttaaccaatcgtccttcttcgaa
aagcagctggccgcttcggctcccgactggttgccccgcgcaagtgttgtgcacaaatcg
ggcacaaccacgtatccgatcatcgacagcgccgacgggctggcgtggatcgctcagcag
gccgcactcgaagtgcacgtgccgcaatggcgtttcgtggccgagtggacccgaaagggt
gaagaaatcaagcccggtccggccacccgtctggtcttcgacctcgaccccggcgaaggt
gtgacgatggcgcagctcgccaaagtagcccgcgcagtgcgtgatttgatcgccgacatc
ggcctgaccaccttcccgctgaccagcggcagcaagggtatgcatctctactgcccgctg
gacaagccggtgagcagccggggagcggtggtgttggccaaacgtgttgctcagcaactg
gaaacgacgatgcccaagctggtgactgccaccatgaccaagagcctgcgggcgggcaag
gtgttcgtggactggagtcagaacagcggctccaagaccaccgtcgcgccgtattccctt
cgtggacgtgaacatccgaccgttgccgcaccacgaagctgggaggagctcgacgacacg
aagctccgacagttgcgttacgacgaggtgttgaaacgggtccagcgtgatggtgacctg
ctcgcgccgctcgacgccgacgtacgcatccccgaccggttgaccaagtaccgcagcatg
cgcgacgcgtcgaaaacacctgaaccggtgccgagcaccaaaccggctgccggccagggc
aattctttcgtgatccaggaacaccacgcccgccggctgcactacgacttccgcctcgaa
cgcgacggcgtcctggtgtcctgggcgattccgaagaatctgccggagaccaccgccgtc
aaccatctggcggtgcacaccgaggaccatccgttggagtacggcaacttcgagggcacg
atcccgaaaggggagtacggcggaggcaaggtggtgatctgggattccggcacctatgac
accgagaagtttcgcgactcaggcgaaaagggcgaagtcatcgtcacgctgcacggccgg
cgaatacggggtcgctacgcgctgattcagaccaacggcgaccagtggttggcccatcgg
atgaaagaccagcacgtcttcgagttcgacgagttggccccgatgctgaccacccacggc
tcggttgcgaaactcaccgcgtcgcaatgggcattcgaagccaagtgggacggctaccgg
ctgctggtcgacgccgaccacggcgaaattcggctgcgatcacgcagtggacgtgacatc
accaaggagttcccccaactacgttccgtggccgacgatctcaccgaacaccacgccgtg
ctggacggcgaggtcgtcgccctcgacgcgtccggtgtgccgagcttctcggagatgcag
aaccgggcacgggccacccggatcgagttctgggcgttcgacctgctctatctggacggt
cggtcgctgttgcgggcccgttatcgcgaccgccggcaactgttggagacgctggccacg
ggcgcgaagggcctcatcgtcccggacttgctgtccggtgacggagcgcaagcgctggag
tactcgcgaaaacaccagtgggagggcgtgatcgccaagaagcgggactcgacctatcag
ccgggccgtcgctcggcgtcgtggatcaaggacaaatactggaacacccaggaggtcgtc
atcggcggctggcgcgccggtgcgggcgggcgcagcagcgggatcggctcactgttgatg
ggcattcccggcgccgacgggctgcgcttcgtcgggcgggtcggtaccgggttcaccgag
cgcgacctggcgaatttgaagaagacactgaagccgctgcacaccaacgaatctcccttc
gatgcaaggctttccacccaggacgcgaaaggtgtgacattcgtgcagccgacactggtc
ggcgaggtccgctacagcgaatggacgtcggatggtcggctgcgtcagcccagctggcgt
gggctgcggcccgacaaggaacctggcgaggtggtcagggaatag
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integrated database retrieval system
