Mycobacterium canettii CIPT 140060008: BN44_10732
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Entry
BN44_10732 CDS
T02419
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase (beta' chain) RpoC (transcriptase beta' chain) (RNA polymerase beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mcq
Mycobacterium canettii CIPT 140060008
Pathway
mcq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN44_10732 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcq03021
]
BN44_10732 (rpoC)
03400 DNA repair and recombination proteins [BR:
mcq03400
]
BN44_10732 (rpoC)
Enzymes [BR:
mcq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN44_10732 (rpoC)
Transcription machinery [BR:
mcq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN44_10732 (rpoC)
DNA repair and recombination proteins [BR:
mcq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN44_10732 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CCK50586
LinkDB
All DBs
Position
765494..769444
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ
PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD
AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE
LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV
KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcatcggtcttgctaccgcggaggacatc
aggcaatggtcctatggcgaggtcaaaaagccggagacgatcaactaccgcacgcttaag
ccggagaaggacggcctgttctgcgagaagatcttcgggccgactcgcgactgggaatgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctcgccgcgccc
gtcacccacatctggtacttcaagggtgtgccctcgcggctggggtatctgctggacctg
gccccgaaggacctggagaagatcatctacttcgctgcctacgtgatcacctcggtcgac
gaggagatgcgccacaatgagctctccacgctcgaggccgaaatggcggtggagcgcaag
gccgtcgaagaccagcgcgacggcgaactagaggcccgggcgcaaaagctggaggccgac
ctggccgagctggaggccgagggcgccaaggccgatgcgcggcgcaaggttcgcgacggc
ggcgagcgcgagatgcgccagatccgtgaccgcgcgcagcgtgagctggaccggttggag
gacatctggagcactttcaccaagctggcgcccaagcagctgatcgtcgacgaaaacctc
taccgcgaactcgtcgaccgctacggcgagtacttcaccggtgccatgggcgcggagtcg
attcagaagctgatcgagaacttcgacatcgacgccgaagccgagtcgctgcgggatgtc
atccgaaacggcaaggggcagaagaagcttcgcgccctcaagcggctgaaggtggttgcg
gcgttccaacagtcgggcaactcgccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggcggccggttcgccacgtccgacttg
aacgacctgtaccgcagggtgatcaaccgcaacaaccggctgaaaaggctgatcgatctg
ggtgcgccggaaatcatcgtcaacaacgagaagcggatgctgcaggaatccgtggacgcg
ctgttcgacaatggccgccgcggccggcccgtcaccgggccgggcaaccgtccgctcaag
tcgctttccgatctgctcaagggcaagcagggccggttccggcagaacctgctcggcaag
cgtgtcgactactcgggccggtcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtggacctcaaccatgcgcagaacatcaagagcgccaagcgcatggtggagcgccagcgc
ccccaagtgtgggatgtgctcgaagaggtcatcgccgagcacccggtgttgctgaaccgc
gcacccaccctgcaccggttgggtatccaggccttcgagccaatgctggtggaaggcaag
gccattcagctgcacccgttggtgtgtgaggcgttcaatgccgacttcgacggtgaccag
atggccgtgcacctgcctttgagcgccgaagcgcaggccgaggctcgcattttgatgttg
tcctccaacaacatcctgtcgccggcatctgggcgtccgttggccatgccgcggctggac
atggtgaccgggctgtactacctgaccaccgaggtccccggggacaccggcgaataccag
ccggccagcggggatcacccggagactggtgtctactcttcgccggccgaagcgatcatg
gcggccgaccgcggtgtcttgagcgtgcgggccaagatcaaggtgcggctgacccagctg
cggccgccggtcgagatcgaggccgagctattcggccacagcggctggcagccgggcgat
gcgtggatggccgagaccacgctgggccgggtgatgttcaacgagctgctgccgctgggt
tatccgttcgtcaacaagcagatgcacaagaaggtgcaggccgccatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcccagaccgtcgacaagctcaaggacgccggc
ttctactgggccacccgcagcggcgtgacggtgtcgatggccgacgtgctggtgccgccg
cgcaagaaggagatcctcgaccactacgaggagcgcgcggacaaggtcgaaaagcagttc
cagcgtggcgctttgaaccacgacgagcgcaacgaggcgctggtggagatttggaaggaa
gccaccgacgaggtcggtcaggcgttgcgggagcactaccccgacgacaacccgatcatc
accatcgtcgactccggcgccaccggcaacttcacccagactcgaacgctggccggtatg
aagggcctggtgaccaacccgaagggtgagttcatcccgcgtccggtcaagtcctccttc
cgtgagggcctgaccgtgctggagtacttcatcaacacccacggcgctcgaaagggcttg
gcggacaccgcgttgcgcaccgccgactccggctacctgacccgacgtctggtggacgtg
tcccaggacgtgatcgtgcgcgagcacgactgccagaccgagcgcggcatcgtcgtcgag
ctggccgagcgtgcacccgacggcacgctgatccgcgacccgtacatcgaaacctcggcc
tacgcgcggaccctgggcaccgacgcggtcgacgaggccggcaacgtcatcgtcgagcgt
ggtcaagacctgggcgatccggagattgacgctctgttggctgctggtattacccaggtc
aaggtgcgttcggtgctgacgtgtgccaccagcaccggcgtgtgcgcgacctgctacggg
cgttccatggccaccggcaagctggtcgacatcggtgaagccgtcggcatcgtggccgcc
cagtccatcggcgaacccggcacccagctgaccatgcgcaccttccaccagggtggcgtc
ggtgaggacatcaccggtggtctgccccgggtgcaggagctgttcgaggcccgggtaccg
cgtggcaaggcgccgatcgccgacgtcaccggccgggttcggctcgaggacggcgagcgg
ttctacaagatcaccatcgttcctgacgacggcggtgaggaagtggtctacgacaagatc
tccaagcggcagcggctgcgggtgttcaagcacgaagacggttccgaacgggtgctctcc
gatggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcatgag
gtgctgcgggtgcagggcccccgcgaggtgcagatacacctggttcgcgaggtccaggag
gtctaccgcgcccaaggtgtgtcgatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgggtgaccatcatcgactcgggctcgacggagtttttgcctggctcgctg
atcgaccgcgcggagttcgaggcagagaaccgccgagtggtggccgagggcggtgagccc
gcggccggccgtccggtgctgatgggcatcacgaaggcgtcgctggccaccgactcgtgg
ctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatcaactgc
cgcagcgataagctcaacggtctgaaggaaaacgtgatcatcggcaagctgatcccggcc
ggtaccggtatcaaccgctaccgcaacatcgcggtgcagcccaccgaggaggcccgcgct
gcggcgtacaccatcccgtcgtatgaggatcagtactacagcccggacttcggtgcggcc
accggtgctgccgtcccgctggacgactacggctacagcgactaccgctag
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