KEGG   Mycoplasmopsis californica ST-6: MCFN_02090
Entry
MCFN_02090        CDS       T03247                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mcr  Mycoplasmopsis californica ST-6
Pathway
mcr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MCFN_02090 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcr03021]
    MCFN_02090 (rpoC)
   03400 DNA repair and recombination proteins [BR:mcr03400]
    MCFN_02090 (rpoC)
Enzymes [BR:mcr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     MCFN_02090 (rpoC)
Transcription machinery [BR:mcr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     MCFN_02090 (rpoC)
DNA repair and recombination proteins [BR:mcr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      MCFN_02090 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AIA29556
UniProt: A0A059XW46
LinkDB
Position
complement(499510..503901)
AA seq 1463 aa
MSRYNKDNKTLIDKITLSLATDKDVQSWSNGEVTKPETINYKSYKPEREGLFDEIIFGPT
TDYKCPVCNTKYKRSDENTDCVRTPMCVKHKSKILPKISRRSRMGHIQLKNPVVHFWFFK
IDHSIISKLLGLKVANSSRSVTKSELEKLIYYKSHIVLEDGGLKSLKKNTIIDISEAALV
YFEALKELRENFDPQGDEYDQEAYEVIDEALNDLREQATSKMGQDYGIDFYEYNEIIHEY
SDALISTGSKAIEYLLENVNPQEEADKLEEEIRELSAQIAANPWANAKIQERAKLYKRFS
VINAFIKSGQDPKSMLIYNLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLKKW
EESDAPMLIKQNEYRMIQEAVDSLIDNARRKPNPVASKDGRPFKSISDALTGKKGRFRQN
LLGKRVDYSGRSVIVVGPELKMHQVGIPREMAAKLFEPWIINELIKSDKNSINSIKAGKK
AVENLDPIIWPYVEKAIEGRPVLLNRAPTLHRLSIQAYEPVLIRGKAIKLHPLSCTPFNA
DFDGDQMAVHVPISPEATREARELMLASKNILGPKDGEPIINPGQDMILGLYYLTMEKAG
GLGEGKFFATYEDMLTAYENKAISIHSRVVLPIEQANKKWINSDEKNKYIISTVGKFIFN
RAFPNTFEFIFGKYITPDGKEIVHTSAKGEHLSHYLLPAGSNFPDLIAQMPINLALTKKD
IAKIVRRVYDQYVSVICMEDLAAILQDINSNDLDKIFEKCASLTTYNNETLNSSHAEILT
KLITEEFNKINHSVLNRNELKIPAWNIEDHTLLLEKVWFKYTNVVANVLDKIKSLGFHFS
TISGTTIAVSDVITLPSTKDKIKEGEAYIEKLKSFFAEGMLTDDERYSLSIKKWAEIKNS
IEDELKKVTKSDPHNPLFMMFTSGARGNSSNFVQLAGMRGLMNNNVKILKADAENERVVR
STVEIPVKSSFLEGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQGIVVREE
DCGTDYGFVVRDIKDSKTNTIIESLAERIEGRFTNKPVIDADGNQIIGVNELITPEIASQ
ISENGIEEVEIRSVLSCYTRNGVCKKCYGKDLALNRVVNIGEAVGVVAAQSIGEPGTQLT
MRTFHTGGVAGVVDITGGFGRLMELIDAYDSPWGRPAIIAPGYGCVNSITTPFDHGRDFK
VIEIEIYNEKGELETIKYETKADRRIVVKEGQKLQPGQKIVEGPIVLGDLLKYADTRSVQ
NYLLKEIQKLYRLQGISIADKYIEIIIRQMLSKVLITDPGDSRFFSGSLVDILAFQKESA
RLLAKGQKPPFGEVKIKGAKQTPLLSDSFLAAASYQETPKILVNASIASQTDNLEGLKEN
IILGHKIPAGTNSNFELKGKYDIRDPRSYFSGKYEDISTDIEQPHDFIFDMEIDHQQDID
EMFRQFNVHEVEDNFSLLEEEIE
NT seq 4392 nt   +upstreamnt  +downstreamnt
atgagtagatataataaagataataagactttaattgataaaatcactctatcattagcc
actgataaagatgtacaatcttgatcaaatggtgaagttacaaaaccagaaaccattaat
tataaaagttataaacctgagcgcgagggactttttgatgaaataatttttggtccaaca
accgattacaaatgtccagtatgtaacacaaaatacaaaagaagtgatgaaaatacagat
tgtgttcgcacccctatgtgtgtaaaacacaaatcaaaaattttgccaaaaataagccgt
cgtagtcggatggggcacattcaattaaaaaatccagttgttcatttctgatttttcaaa
atcgaccattcaattatttcgaagcttttaggtttaaaagtagcaaatagttctcgctcg
gttacaaaatctgagttagaaaaattaatttactacaaaagccacatcgtcttggaagat
ggtggtctaaaatcactgaaaaagaatacaattattgatattagtgaagctgcacttgtc
tattttgaagcgcttaaagaattacgtgaaaatttcgatccacagggcgatgaatatgac
caagaagcttacgaagttattgatgaagctcttaatgatttacgtgagcaagcaacttca
aaaatgggtcaagactatggtattgacttttatgaatataatgaaattatccacgaatat
tctgatgcgttaatttccactggttctaaagctattgagtatttattagaaaatgtaaac
ccacaagaagaagctgacaagttagaagaagaaattcgtgagttaagtgctcaaatcgcc
gcaaatccttgagcaaatgctaaaattcaagaaagagccaaattatataagcgtttttca
gtaattaatgccttcattaagtcgggacaagatccaaaatcaatgttaatatacaacctt
cctgttatccccgccgacttacgtccgctagttcaattggatggcggtcgccactcaaca
agtgatattaatgaattgtaccgtcggatcattatccgaaataatcgtttgaaaaaatga
gaagaaagcgatgctccaatgttgattaaacaaaatgagtatcgtatgattcaagaggct
gtcgattctttaattgacaacgccagaagaaaaccgaatccggtcgcttcaaaagatggt
cgtccatttaaatcaatttctgatgccttaactggtaaaaaaggtcgtttccgtcaaaac
ctactaggtaaaagggttgattattcaggccgttcagttattgttgttggtccagaatta
aaaatgcaccaagtcggaattccacgagaaatggcagcaaaattatttgagccttgaatc
attaatgaattaattaaatcagacaaaaactcaatcaattcaattaaagcgggtaaaaaa
gcagttgaaaatctagatccaattatttggccatacgttgaaaaagcaattgaaggccgt
cctgtattacttaaccgtgctccaacattgcaccgtttaagtattcaagcttatgagccg
gtgctaattcgtggaaaagcgattaaattacacccactttcatgtaccccttttaacgct
gacttcgatggtgaccagatggctgttcacgtaccaattagtcctgaagctactcgtgaa
gcccgtgaattaatgcttgcttccaaaaatattctaggtccaaaagatggtgagcctatt
attaacccaggacaagacatgattttaggtttatattacctaacaatggaaaaagcgggg
ggattaggtgaaggtaaattctttgcaacttatgaagatatgctaacagcatatgaaaat
aaagcaataagcattcactctagagttgtattaccaatcgaacaagcaaataaaaaatga
attaacagcgatgaaaaaaacaagtatattatttcaacagttggtaaatttatttttaac
cgtgcttttccaaatacttttgaatttatttttggtaaatatattacccctgatggaaaa
gaaatcgttcacacatcagctaagggagaacatttaagtcattatttactgcctgcgggc
tcaaattttcctgacttgattgcacaaatgccaattaatttagcgcttaccaaaaaagac
atcgctaagattgttcgtcgtgtttatgaccaatatgttagtgttatttgcatggaagat
ttagcggctattttacaagatattaatagcaatgatttagataagatttttgaaaagtgc
gcttctttaactacttacaataatgaaactttaaatagttcgcatgctgagattttaact
aaattaataacagaagaattcaataaaattaatcacagtgttttaaaccgtaatgaatta
aaaataccagcctgaaacattgaagatcacacattattactggaaaaagtatgatttaaa
tacactaatgttgtcgccaatgttcttgacaaaattaagtcattaggttttcatttttca
acaatttcaggaacaacaattgctgttagtgatgtaatcactttaccttcaaccaaagac
aaaattaaagaaggtgaagcttacattgaaaaattaaaatcgttctttgctgaaggtatg
ttaaccgatgatgaaagatactcattatcaattaaaaaatgagcagaaattaaaaattct
attgaggatgagttgaaaaaagtaactaaatccgatcctcataacccattattcatgatg
tttacatcaggagcgcgtggtaactcaagtaacttcgttcaactagctggaatgcgtgga
ttgatgaataacaacgttaaaattcttaaagccgacgccgaaaatgaaagagttgttcgt
tcaactgttgaaattccagttaaatcttcattccttgaaggtctaacagcttatgaattc
tattcatctactcacggggctagaaaagggctaactgatactgctcttaacacggctaag
tcaggttacttgacacgtcgtttagtggacgttgcacaaggtattgtggttcgcgaagaa
gattgtggaaccgattatggctttgttgtccgtgacattaaggactcaaaaacaaacaca
attattgagtcattagccgaaagaatcgaaggacgtttcactaacaaacctgttattgat
gctgatggaaatcaaattataggcgttaatgaattaataacacctgagattgctagtcaa
atcagtgaaaatggcattgaagaagttgaaataagatcagttctgtcttgctacacacgt
aatggtgtatgtaaaaaatgttacggaaaagatttagcattaaaccgtgttgttaatatc
ggagaggcagttggagttgttgcagcgcaatcaattggtgaacccggaacgcagctaact
atgcgtactttccacaccggtggtgttgccggggttgttgatattacaggcggttttggt
cgtttgatggaattaatcgatgcttacgattcaccttgaggacgtccggctattatcgca
cctggatacgggtgtgtgaattcaatcacaactccatttgaccacggccgcgattttaag
gttatagagatagaaatttataacgaaaaaggcgagttagaaactataaaatatgaaacg
aaagctgaccgtcggattgttgtcaaagaaggacaaaaactacaaccagggcaaaaaatt
gttgaaggacctattgttttaggcgatttattaaaatatgctgacacacgttcagttcaa
aattacttattaaaagaaatccaaaaactttatcgtttacaaggtatctcaatcgctgac
aaatatattgaaattattattcgtcaaatgctttcaaaagttctaatcacagaccctgga
gattctagatttttctcaggttcattagtcgatatcttagcattccaaaaagaatcagca
cgtttattagctaaagggcaaaaaccaccatttggtgaggttaaaattaaaggagctaaa
caaacgccgttattatctgattcgttcttggctgccgcttcatatcaagaaacgccaaaa
attttagttaacgcttcaattgcgtcacaaactgataatctagaaggtttaaaagagaat
attattttaggtcataaaattccagcgggtacaaactcaaattttgaacttaaaggaaaa
tatgatatcagagatcctcgtagttactttagtggtaaatatgaagatatatctaccgat
attgaacaacctcatgatttcatttttgatatggaaatagatcatcaacaagatattgat
gaaatgtttagacaatttaatgttcatgaagtagaagacaatttcagtttacttgaagag
gaaattgaataa

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