Mycoplasmopsis californica ST-6: MCFN_02090
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Entry
MCFN_02090 CDS
T03247
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mcr
Mycoplasmopsis californica ST-6
Pathway
mcr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MCFN_02090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcr03021
]
MCFN_02090 (rpoC)
03400 DNA repair and recombination proteins [BR:
mcr03400
]
MCFN_02090 (rpoC)
Enzymes [BR:
mcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MCFN_02090 (rpoC)
Transcription machinery [BR:
mcr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MCFN_02090 (rpoC)
DNA repair and recombination proteins [BR:
mcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MCFN_02090 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AIA29556
UniProt:
A0A059XW46
LinkDB
All DBs
Position
complement(499510..503901)
Genome browser
AA seq
1463 aa
AA seq
DB search
MSRYNKDNKTLIDKITLSLATDKDVQSWSNGEVTKPETINYKSYKPEREGLFDEIIFGPT
TDYKCPVCNTKYKRSDENTDCVRTPMCVKHKSKILPKISRRSRMGHIQLKNPVVHFWFFK
IDHSIISKLLGLKVANSSRSVTKSELEKLIYYKSHIVLEDGGLKSLKKNTIIDISEAALV
YFEALKELRENFDPQGDEYDQEAYEVIDEALNDLREQATSKMGQDYGIDFYEYNEIIHEY
SDALISTGSKAIEYLLENVNPQEEADKLEEEIRELSAQIAANPWANAKIQERAKLYKRFS
VINAFIKSGQDPKSMLIYNLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLKKW
EESDAPMLIKQNEYRMIQEAVDSLIDNARRKPNPVASKDGRPFKSISDALTGKKGRFRQN
LLGKRVDYSGRSVIVVGPELKMHQVGIPREMAAKLFEPWIINELIKSDKNSINSIKAGKK
AVENLDPIIWPYVEKAIEGRPVLLNRAPTLHRLSIQAYEPVLIRGKAIKLHPLSCTPFNA
DFDGDQMAVHVPISPEATREARELMLASKNILGPKDGEPIINPGQDMILGLYYLTMEKAG
GLGEGKFFATYEDMLTAYENKAISIHSRVVLPIEQANKKWINSDEKNKYIISTVGKFIFN
RAFPNTFEFIFGKYITPDGKEIVHTSAKGEHLSHYLLPAGSNFPDLIAQMPINLALTKKD
IAKIVRRVYDQYVSVICMEDLAAILQDINSNDLDKIFEKCASLTTYNNETLNSSHAEILT
KLITEEFNKINHSVLNRNELKIPAWNIEDHTLLLEKVWFKYTNVVANVLDKIKSLGFHFS
TISGTTIAVSDVITLPSTKDKIKEGEAYIEKLKSFFAEGMLTDDERYSLSIKKWAEIKNS
IEDELKKVTKSDPHNPLFMMFTSGARGNSSNFVQLAGMRGLMNNNVKILKADAENERVVR
STVEIPVKSSFLEGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQGIVVREE
DCGTDYGFVVRDIKDSKTNTIIESLAERIEGRFTNKPVIDADGNQIIGVNELITPEIASQ
ISENGIEEVEIRSVLSCYTRNGVCKKCYGKDLALNRVVNIGEAVGVVAAQSIGEPGTQLT
MRTFHTGGVAGVVDITGGFGRLMELIDAYDSPWGRPAIIAPGYGCVNSITTPFDHGRDFK
VIEIEIYNEKGELETIKYETKADRRIVVKEGQKLQPGQKIVEGPIVLGDLLKYADTRSVQ
NYLLKEIQKLYRLQGISIADKYIEIIIRQMLSKVLITDPGDSRFFSGSLVDILAFQKESA
RLLAKGQKPPFGEVKIKGAKQTPLLSDSFLAAASYQETPKILVNASIASQTDNLEGLKEN
IILGHKIPAGTNSNFELKGKYDIRDPRSYFSGKYEDISTDIEQPHDFIFDMEIDHQQDID
EMFRQFNVHEVEDNFSLLEEEIE
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgagtagatataataaagataataagactttaattgataaaatcactctatcattagcc
actgataaagatgtacaatcttgatcaaatggtgaagttacaaaaccagaaaccattaat
tataaaagttataaacctgagcgcgagggactttttgatgaaataatttttggtccaaca
accgattacaaatgtccagtatgtaacacaaaatacaaaagaagtgatgaaaatacagat
tgtgttcgcacccctatgtgtgtaaaacacaaatcaaaaattttgccaaaaataagccgt
cgtagtcggatggggcacattcaattaaaaaatccagttgttcatttctgatttttcaaa
atcgaccattcaattatttcgaagcttttaggtttaaaagtagcaaatagttctcgctcg
gttacaaaatctgagttagaaaaattaatttactacaaaagccacatcgtcttggaagat
ggtggtctaaaatcactgaaaaagaatacaattattgatattagtgaagctgcacttgtc
tattttgaagcgcttaaagaattacgtgaaaatttcgatccacagggcgatgaatatgac
caagaagcttacgaagttattgatgaagctcttaatgatttacgtgagcaagcaacttca
aaaatgggtcaagactatggtattgacttttatgaatataatgaaattatccacgaatat
tctgatgcgttaatttccactggttctaaagctattgagtatttattagaaaatgtaaac
ccacaagaagaagctgacaagttagaagaagaaattcgtgagttaagtgctcaaatcgcc
gcaaatccttgagcaaatgctaaaattcaagaaagagccaaattatataagcgtttttca
gtaattaatgccttcattaagtcgggacaagatccaaaatcaatgttaatatacaacctt
cctgttatccccgccgacttacgtccgctagttcaattggatggcggtcgccactcaaca
agtgatattaatgaattgtaccgtcggatcattatccgaaataatcgtttgaaaaaatga
gaagaaagcgatgctccaatgttgattaaacaaaatgagtatcgtatgattcaagaggct
gtcgattctttaattgacaacgccagaagaaaaccgaatccggtcgcttcaaaagatggt
cgtccatttaaatcaatttctgatgccttaactggtaaaaaaggtcgtttccgtcaaaac
ctactaggtaaaagggttgattattcaggccgttcagttattgttgttggtccagaatta
aaaatgcaccaagtcggaattccacgagaaatggcagcaaaattatttgagccttgaatc
attaatgaattaattaaatcagacaaaaactcaatcaattcaattaaagcgggtaaaaaa
gcagttgaaaatctagatccaattatttggccatacgttgaaaaagcaattgaaggccgt
cctgtattacttaaccgtgctccaacattgcaccgtttaagtattcaagcttatgagccg
gtgctaattcgtggaaaagcgattaaattacacccactttcatgtaccccttttaacgct
gacttcgatggtgaccagatggctgttcacgtaccaattagtcctgaagctactcgtgaa
gcccgtgaattaatgcttgcttccaaaaatattctaggtccaaaagatggtgagcctatt
attaacccaggacaagacatgattttaggtttatattacctaacaatggaaaaagcgggg
ggattaggtgaaggtaaattctttgcaacttatgaagatatgctaacagcatatgaaaat
aaagcaataagcattcactctagagttgtattaccaatcgaacaagcaaataaaaaatga
attaacagcgatgaaaaaaacaagtatattatttcaacagttggtaaatttatttttaac
cgtgcttttccaaatacttttgaatttatttttggtaaatatattacccctgatggaaaa
gaaatcgttcacacatcagctaagggagaacatttaagtcattatttactgcctgcgggc
tcaaattttcctgacttgattgcacaaatgccaattaatttagcgcttaccaaaaaagac
atcgctaagattgttcgtcgtgtttatgaccaatatgttagtgttatttgcatggaagat
ttagcggctattttacaagatattaatagcaatgatttagataagatttttgaaaagtgc
gcttctttaactacttacaataatgaaactttaaatagttcgcatgctgagattttaact
aaattaataacagaagaattcaataaaattaatcacagtgttttaaaccgtaatgaatta
aaaataccagcctgaaacattgaagatcacacattattactggaaaaagtatgatttaaa
tacactaatgttgtcgccaatgttcttgacaaaattaagtcattaggttttcatttttca
acaatttcaggaacaacaattgctgttagtgatgtaatcactttaccttcaaccaaagac
aaaattaaagaaggtgaagcttacattgaaaaattaaaatcgttctttgctgaaggtatg
ttaaccgatgatgaaagatactcattatcaattaaaaaatgagcagaaattaaaaattct
attgaggatgagttgaaaaaagtaactaaatccgatcctcataacccattattcatgatg
tttacatcaggagcgcgtggtaactcaagtaacttcgttcaactagctggaatgcgtgga
ttgatgaataacaacgttaaaattcttaaagccgacgccgaaaatgaaagagttgttcgt
tcaactgttgaaattccagttaaatcttcattccttgaaggtctaacagcttatgaattc
tattcatctactcacggggctagaaaagggctaactgatactgctcttaacacggctaag
tcaggttacttgacacgtcgtttagtggacgttgcacaaggtattgtggttcgcgaagaa
gattgtggaaccgattatggctttgttgtccgtgacattaaggactcaaaaacaaacaca
attattgagtcattagccgaaagaatcgaaggacgtttcactaacaaacctgttattgat
gctgatggaaatcaaattataggcgttaatgaattaataacacctgagattgctagtcaa
atcagtgaaaatggcattgaagaagttgaaataagatcagttctgtcttgctacacacgt
aatggtgtatgtaaaaaatgttacggaaaagatttagcattaaaccgtgttgttaatatc
ggagaggcagttggagttgttgcagcgcaatcaattggtgaacccggaacgcagctaact
atgcgtactttccacaccggtggtgttgccggggttgttgatattacaggcggttttggt
cgtttgatggaattaatcgatgcttacgattcaccttgaggacgtccggctattatcgca
cctggatacgggtgtgtgaattcaatcacaactccatttgaccacggccgcgattttaag
gttatagagatagaaatttataacgaaaaaggcgagttagaaactataaaatatgaaacg
aaagctgaccgtcggattgttgtcaaagaaggacaaaaactacaaccagggcaaaaaatt
gttgaaggacctattgttttaggcgatttattaaaatatgctgacacacgttcagttcaa
aattacttattaaaagaaatccaaaaactttatcgtttacaaggtatctcaatcgctgac
aaatatattgaaattattattcgtcaaatgctttcaaaagttctaatcacagaccctgga
gattctagatttttctcaggttcattagtcgatatcttagcattccaaaaagaatcagca
cgtttattagctaaagggcaaaaaccaccatttggtgaggttaaaattaaaggagctaaa
caaacgccgttattatctgattcgttcttggctgccgcttcatatcaagaaacgccaaaa
attttagttaacgcttcaattgcgtcacaaactgataatctagaaggtttaaaagagaat
attattttaggtcataaaattccagcgggtacaaactcaaattttgaacttaaaggaaaa
tatgatatcagagatcctcgtagttactttagtggtaaatatgaagatatatctaccgat
attgaacaacctcatgatttcatttttgatatggaaatagatcatcaacaagatattgat
gaaatgtttagacaatttaatgttcatgaagtagaagacaatttcagtttacttgaagag
gaaattgaataa
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