Methanobacterium congolense: MCBB_0172
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Entry
MCBB_0172 CDS
T04503
Symbol
lig
Name
(GenBank) DNA ligase {ECO:0000255|HAMAP-Rule:MF_00407}
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mcub
Methanobacterium congolense
Pathway
mcub03030
DNA replication
mcub03410
Base excision repair
mcub03420
Nucleotide excision repair
mcub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCBB_0172 (lig)
03410 Base excision repair
MCBB_0172 (lig)
03420 Nucleotide excision repair
MCBB_0172 (lig)
03430 Mismatch repair
MCBB_0172 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcub03032
]
MCBB_0172 (lig)
03400 DNA repair and recombination proteins [BR:
mcub03400
]
MCBB_0172 (lig)
Enzymes [BR:
mcub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MCBB_0172 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
MCBB_0172 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
MCBB_0172 (lig)
DNA replication proteins [BR:
mcub03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
MCBB_0172 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
MCBB_0172 (lig)
DNA repair and recombination proteins [BR:
mcub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
MCBB_0172 (lig)
NER (nucleotide excision repair)
Other NER factors
MCBB_0172 (lig)
MMR (mismatch excision repair)
Other MMR factors
MCBB_0172 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
SCG84760
UniProt:
A0A1D3KZR8
LinkDB
All DBs
Position
I:189763..191454
Genome browser
AA seq
563 aa
AA seq
DB search
MNSKDGMRYMELVDVYEKLDSTTKRLEKTTILADFFRKIGGEDPELLPVVTLLSLGRVFP
TWSEEELGIASKLLMNAMALVAGVRPEDVEDMMRDAGDIGTAAELLLGKKKQATFFTVPL
TIQKVHSNLMKIADISGNRSQYKKMEILRELFSSASPEEAKYITRTVLEELRVGVGEGTI
KDAIAEAFSVEKGVVERAHMLTNDLGLVSEVAKEEGVEGLKKLSLKPGKPVKPMLAQLSP
GIRESVEEMGWALCETKYDGIRVQIHRSGDEVNIFTRRLENISNAVPEIIEYIEEALPHE
DFIVEGEIIVTKDGKPISFQYILQRVRRKYEIEKMREQVPLKLYLFDVLYYHGPQIDTPF
EDRRKILESMVDVMEDKLQLSNQVKATPEDIWRAEDLFTESLKGGHEGIMIKDPHAPYMP
GIRGKKMLKRKAEPETLDLVVVGGTYGKGKRAHFIGSYLLAVQDENNELKTIAHAATGLD
DQMLLELSEMVEPLITKKTGRRVEIVPSIILEIAYSEIVKSPEYESGYSLRFPVVKRVRE
DISIEDIDTVERVESMFKDVQTL
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaaaggatggaatgaggtacatggaacttgtggatgtatacgagaagttggac
tccacaaccaagaggcttgaaaaaaccaccatactcgcggattttttcaggaaaataggg
ggagaagatccggagcttcttccagttgttacactgctctcccttggaagggttttccca
acatggagtgaggaggaacttggaatagcatcaaaactccttatgaatgcaatggcactg
gttgcaggagttaggcctgaggacgttgaggacatgatgcgggatgcaggggatattgga
accgctgcagaactacttcttggtaaaaaaaagcaggcaacatttttcacagtccccctg
accatccagaaggttcacagcaacctcatgaagatagcagatatttcaggaaacaggtcc
cagtacaagaagatggagatattacgggaactcttctcatctgcatccccggaggaggcc
aagtacatcacaagaacagtgcttgaagagctcagggttggagtgggtgagggaaccata
aaggatgccattgcagaagctttctcagttgagaaaggggtagttgaaagggcgcacatg
ctcacaaatgatcttggtcttgtttcagaggttgcaaaggaagaaggtgttgaaggactt
aaaaaactcagcctcaaaccaggaaaacctgtcaagccaatgctagcacagctctctcct
gggatcagggagagtgttgaggagatgggttgggctctctgtgaaaccaagtacgacggt
ataagggttcagatacacagatcaggggatgaagttaacatattcaccagaagacttgag
aacatctccaatgcagttcctgaaatcattgagtacatagaagaagcattgccccatgag
gatttcatcgttgaaggtgaaataatcgttacaaaggatggtaaacctatatctttccag
tacatactccagagggtcaggaggaagtacgaaatcgagaagatgcgcgaacaggtgcca
ctgaagctctacctttttgacgtgctgtactaccatggtcctcagatagatacgcccttc
gaggacaggcgtaagatacttgaatccatggttgatgtaatggaagataagctccagctt
tccaatcaggtgaaggccacacctgaggatatctggagggctgaagatctcttcacagaa
tcactgaaggggggacatgagggtataatgatcaaggatccccatgcaccttacatgccg
ggcatccgaggcaagaaaatgctcaaaagaaaggcagaacctgaaaccctggatctggtg
gttgttggtggaacctacggtaaaggtaagagagctcacttcataggttcatatctgctg
gcagttcaggatgaaaacaacgaactgaagaccattgcacatgcagcaaccggtctggac
gatcagatgcttctggaactatctgagatggttgaaccccttataaccaagaaaacaggc
agaagggtggagatagttccatccatcatccttgagattgcctacagtgagatcgttaag
agcccggagtacgagagtggatactccttgaggttccctgttgttaagagggtaagggaa
gatataagtattgaggatattgacacggttgaacgtgttgaatcgatgtttaaagatgtt
caaacgctttaa
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