Microbacterium chocolatum: A8L33_12590
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Entry
A8L33_12590 CDS
T04340
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcw
Microbacterium chocolatum
Pathway
mcw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A8L33_12590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcw03400
]
A8L33_12590
Enzymes [BR:
mcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8L33_12590
DNA repair and recombination proteins [BR:
mcw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A8L33_12590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANG86102
UniProt:
A0A0M8MMQ3
LinkDB
All DBs
Position
complement(2647755..2651354)
Genome browser
AA seq
1199 aa
AA seq
DB search
MTVPGILRALEQAESFRDAVAAASVDADFSLVEGLDAPLVAALLERRRAAGHPPVVLVIA
PTGRRAESFGPALRSLVPGAEMLHFPAWETLPHERLSPSAEIVGRRLETLGRIAEWSGTT
PLVITASVRAAVQPLAAGLTDIRPVVLTAGSRAHDLADVARELVTLAYHRVDMVSRRGEF
AVRGGILDVFPPTAAHPFRVEFFGDEVDQIRAFSVADQRSLPGEIAEVSLIASRELLLTD
AVRERAAGLTESFPGLRSMLEKMSEGIPVEGMESLLPAVADGLVSLADYLPERAAVVLVE
PERAITRAITLSDTNREFLDAAWSAATAGAKTPVDLGAGDFLSLPALRAAAAERGDVWWT
LSTFDSGAADALAEGLIDIDIALERSATIRVPGAPVPSFHGNVDGAIEHVAGLLADGWRV
VVAASGAGLVERARDVLAEHGTAARVVSDLAELPEPGVVHAVVTELERGFEVADARLAVL
TESEFYGRTIGGDQRVVKKLASRRKNVVDPLQLKPGDIVVHATHGIGRFIELTQREVSSG
GRNAVKTTREYLVLEYAPSKRGYPGDRLFVPTDQLDLLSRYVGGEAPTLSKMGGSDWAAA
KGKARRAVRDIAVELVKLYSARMSAKGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEIK
ADMEKPVPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHTETFTERF
AGFPVKVRALSRFQTDKQAKEIVAGLADGTIDMVIGTHRILTEQVVFKDLGLMIIDEEQR
FGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILSYVGAR
NDKQIAAAIRRELLREGQVFYVHNRVQSIQRVAADLAELVPEARIAVAHGQMGEHQLEQV
VDDFWERKADVLVSTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRARERAYAY
FLYDDQKPLSETAADRLETIAVNNDLGSGMQVALKDLEIRGAGNLLGAEQAGHIAGVGFD
LYLRMIGEAVATFRGEETEGPAELRLELPVEARIPDSYIDSERLRLEAYQKLSAAASATA
KEGAIALVREELADRYGAPPEEVEGLFSIAHLRRRAARAQLADVVAMGPNLRIAPANLPD
SMRVRLQRLYPKAKLLAGGDALVVPLPTADGAILTDAALVAWVAQLLDQLWPEPEQTAG
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
gtgacagttcccgggatcctccgcgccctcgaacaggccgaatcgtttcgggatgccgtc
gccgcggcatccgtggacgccgatttctcgctcgtcgaaggcctggacgcccccctcgtc
gccgctcttctcgaacgacgacgtgcggcgggacacccgcccgtcgtcctcgtcatcgcc
cccaccgggcgccgcgcggaatccttcggtccggcgctgcgctccctcgtgcccggcgcc
gagatgctgcacttcccggcgtgggagaccctcccgcacgagcggctgagcccgagtgct
gagatcgtgggccggcgcctggagaccctcgggcggatcgcggagtggtccgggaccacg
ccgctcgtgatcaccgcatccgtgcgggccgcggtgcagccgctggccgccgggctcacc
gacatccgccccgtggtgctgacggcggggagccgcgcccacgatctcgccgacgtggcg
cgcgagctggtgaccctcgcgtaccaccgcgtggacatggtgtcccgccggggcgagttc
gccgtgcgcggtggaatcctcgacgtcttcccgccgacggcggcacaccccttccgcgtg
gagttcttcggcgacgaggtcgatcagatccgcgcgttctccgtggccgaccagcgctcc
ctccccggggagatcgcggaggtctccctcatcgccagccgcgaactgctgctcaccgac
gccgtgcgcgagcgcgcggcggggctgacggagtcgttcccgggcctgcggtcgatgctg
gagaagatgtccgagggcattcccgtggagggcatggagtcgctgctgcccgcggtcgcc
gatggactggtgagcctcgcggactatctgcccgaacgggccgcggtcgtgttggtcgag
ccggagcgcgccatcacccgggcgatcacgctcagcgacacgaaccgcgagttcctcgat
gcggcatggagcgcggcgacggcaggggccaagacgccggtcgatctcggagcgggcgat
ttcctctccctcccggctctccgtgccgccgccgcggagcgcggggacgtgtggtggacc
ctcagcaccttcgattccggagcggcggatgccctcgcggagggcctcatcgacatcgac
atcgcgctggagcggtcggcgaccatccgtgtgcccggtgctccggtgccctccttccac
ggcaacgtcgacggcgcgatcgagcacgtcgcggggctcctcgccgacggctggcgggtc
gtggtggccgcctccggcgcggggctcgtcgagcgcgcccgcgacgtcctggccgagcac
ggcacggccgcgcgcgtggtgtccgatctcgccgagctcccggagccgggggtcgtccac
gcggtcgtgaccgaactcgagcgtggcttcgaagtcgccgacgcgcgcctggcggtcctc
accgagtcggagttctacgggcggaccatcggcggcgaccagcgggtggtgaagaagctc
gcatcgcggcggaagaacgtcgtcgacccgttgcagctgaagcccggcgacatcgtcgtc
cacgccacccacggtatcggccgcttcatcgagctcactcagcgggaggtctcctccggg
gggcgcaacgcggtgaagacgacgcgcgagtacctcgtgctggagtacgcaccgtccaag
cgcggctacccgggggaccgtctcttcgtgcccactgatcagttggacctcctctcgcgc
tacgtcgggggagaggcgccgacgctgtcgaagatgggcggcagcgattgggccgccgcg
aagggcaaggcgcgccgggccgtccgcgacatcgcggtcgaactggtgaagctgtactcc
gcacggatgtcggccaagggccacgccttcggtcccgacacgccctggcagcgtgagctg
gaggaggccttccccttcgccgagacccccgatcagctccagacgatcgacgagatcaag
gccgatatggagaagcccgtcccgatggaccgtctgctctccggcgacgtcgggttcggc
aagaccgaggtggccgtgcgcgcggcgttcaaggccatccaggacggcaaacaggtcgcg
atgctcgtgcccaccacgctcctggtcaagcagcacaccgagaccttcaccgagcgcttc
gccggattccccgtgaaggtccgggcgctgtcgcgcttccagaccgacaagcaggccaag
gagatcgtcgcgggccttgccgacggcacgatcgacatggtcatcggcacccaccgcatc
ctcaccgagcaggtggtcttcaaggatctcggactgatgatcatcgacgaggagcagcgg
ttcggcgtcgagcacaaggatgccctgaagaagctgaagaccaacgtcgacatcctcgcc
atgagtgcgacgccgatcccccggaccctggagatggccgtcaccggcatccgggagatg
tccacgctcgcgacccctccggaggaccggcatccgatcctgtcttacgtcggagcgcgc
aacgacaagcagatcgccgcggcgatccgacgggagctcctgcgcgaggggcaggtgttc
tacgtgcacaaccgcgttcagtcgatccagcgggtggcggccgatctggccgagctcgta
ccggaggcacgcatcgccgtggcgcacgggcagatgggcgagcatcagctcgaacaggtg
gtggacgacttctgggagcgcaaggccgacgtcctcgtctcgacgaccatcatcgagacg
ggtctggacatcgccaacgcgaacacgatcatcatcgaccgcgccgacaagtacggactc
agccagctccaccagcttcgaggtcgcgtcgggcgcgcgcgcgaacgcgcctacgcctac
ttcctctacgacgatcagaagccgctgtccgagacggcggccgatcggttggagacgatc
gccgtcaacaacgacctcggttccgggatgcaggtcgcgctcaaggacctcgagatccgc
ggagcgggaaacctcctcggcgccgagcaggccggtcacatcgcgggggtcggcttcgac
ctctacctgcgcatgatcggcgaagccgtcgcgaccttccgcggcgaggagaccgagggg
cccgccgagctgcgcctggagctccccgtcgaggcgcgcatccccgactcgtacatcgac
agcgagcggctccgcctcgaggcctaccagaagctctccgccgcggcgtcggccaccgcg
aaggagggcgcgatcgccctcgtccgcgaggagctcgccgaccgctacggcgcaccgccg
gaggaggtcgaggggctcttctcgatcgcccacctgcgccgacgggccgcgcgcgcccag
ctcgccgacgtcgtggcgatgggcccgaacctccggatcgcgcccgcgaacctccccgat
tcgatgcgcgtgcgcctgcagcgcctgtacccgaaggcgaagctcctcgccgggggcgac
gcgctcgtggtgccgctgccgaccgcggacggcgcgatcctcacggatgcggcgctggtg
gcgtgggtggcgcagctcttggatcagctgtggccggagccggagcagaccgcggggtag
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