Musca domestica (house fly): 101899363
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Entry
101899363 CDS
T03448
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mde
Musca domestica (house fly)
Pathway
mde03013
Nucleocytoplasmic transport
mde03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mde00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101899363
03015 mRNA surveillance pathway
101899363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mde03019
]
101899363
Enzymes [BR:
mde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101899363
5.6.2.5 RNA 5'-3' helicase
101899363
Messenger RNA biogenesis [BR:
mde03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101899363
mRNA cycle factors
Common to processing body (P body) and stress granule
101899363
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
AAA_22
ATPase
SRP54
nSTAND3
CLEC16A_C
Motif
Other DBs
NCBI-GeneID:
101899363
NCBI-ProteinID:
XP_005184359
UniProt:
A0A1I8NDC1
LinkDB
All DBs
Position
Unknown
AA seq
1221 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEENDLIGGGTQASDFDYRDLTLASQTQASQLECGLGAGSGGI
SSQTFGRKLDLQTKLGTTNGSTDLQFEEEDEDNALCPVDVLPQHACKYCGIHDPGTVVMC
NNCKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHSEGPLGETVLECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQNSLKDMNWDQDQWKPLISDRSFLPWLVKVPTEQEQLRARQI
SAAQINKLEELWKDNIEATFQDLEKPGIDTEPSQVLLRYEDGYQYEKIFAPLVMLEAEYD
KKLKESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKPWESI
GHVIKVPDNFGEDVGLELKSSAKAPIQCTSNFAVDFIWKCTSFDRMRRALKLFALDRNSV
SNYIYSRLLGHGRHDGTDEAVFRGPPPKLYSAPNLPDLNRSQVYAVKHALQRPLSLIQGP
PGTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAID
SPVNFLALHNQIRNMETNIELKKLQQLKDETGELSSADEKRYRTLKRAAENQLLEAADVI
CCTCVGAGDARLQRIRFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCK
KAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRKLK
IDFPWPQPDRPMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLKAGVKPEQIGIIT
PYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEKQGIGFLS
DPRRLNVALTRSKYGTIIVGNPKILSKQPLWNHLLNFYKDRKVLVEGSLNNLRESMIQFQ
KPKKLVNTLNMGAHFMSTMMADAREAIIPGSFYDRSGQFGYTGTTGSNNYGYNFGNNLIG
GNNSAFGFGNTSHMQNMGGLGNTSHLSSFMNPQGGGAGSGAMGGGFGAPGSQRHNINQLT
NSGLNNGPNNQQWHNFQHDSISYISTERAQAAMNNMPVPVGMFMNMSNIPPRFYNQHQQA
IQAAAKQGRRAGGSVGPIGSSAMNMPSNNSNKNVANKAPGKGRNTNTTSSATTNALTSSA
AASTQSSQNSAAILTQKNMSQQMSQNVFTGLSQQPELSQDFGQISQMDGILSQDVGFGTD
ALNNDRLNLGLNSQSQFSQPY
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggacgcttacggaccgagttcacaaacgcttacatttttagatacggaagag
aacgatttgattggcggtggaacgcaggcctccgattttgattaccgagatctaacttta
gcgtctcaaactcaagcttcacagctggaatgcggccttggagctggcagtggtggtatt
tcatcccagacatttggccgcaaattagatttgcaaacgaaattgggcaccaccaacggc
tctacagatctacaattcgaagaggaagacgaagacaatgccctgtgtcccgttgatgta
ttaccgcagcatgcatgcaaatattgcggtattcatgatcccggcaccgttgtaatgtgt
aacaattgcaaaaagtggttctgcaatggccgtggcagtacatctggctcgcacatcgtt
aaccatttggtcagggcgaagcatcgtgaggtcactctgcattcggagggacctttgggt
gaaaccgtcttggagtgttattcctgtggtgtacgtaatgtatttgtcttgggctttata
ccggccaaggcggattcagtagtggtattactatgtcgccaaccctgtgcagcccagaac
tccttaaaggacatgaactgggatcaggatcagtggaaaccattgatatcggatcgttcc
tttttgccatggttggtaaaggtaccgacggaacaagagcagctgagagcgaggcaaata
tctgcagctcaaatcaataaattggaggagctttggaaggataacattgaagcaaccttt
caagatttggaaaagccaggtattgacactgaaccgtcacaggttttgctacgctacgaa
gatggttatcaatatgagaagatattcgccccattggttatgttggaggcagagtacgat
aaaaaactaaaggagtcgcaaacacaggaaggcattgaagtccgctgggatgttggtcta
aacaaaaagaccatagcctactttacgttggcgaaaacggattcggacatgaagctaatg
cacggcgatgaattgcgtttacgttacgtgggtgagcttcacaaaccatgggaatccatc
ggtcatgtcattaaagtgcccgacaactttggtgaagatgttggcttggaattaaagtct
tccgctaaggcacccattcaatgtacttcaaattttgccgtcgacttcatttggaaatgt
acttcgtttgatcgcatgcgtcgcgctcttaaactatttgcgctcgatcgcaattccgta
tccaattatatatattcgcgactactaggccacgggcgtcacgatggaaccgacgaggcg
gtattccgaggccccccaccaaaattgtatagtgcaccgaacttacccgaccttaatcga
tctcaagtctatgctgtgaagcatgcattgcagagacctctcagtcttatacagggtcca
ccgggtacaggcaagacggttacgtctgccacaatagtctatcagttggtcaaacaacat
ggcggcacagtgctggtgtgtgcccccagtaatactgctgtcgaccaactgaccgagaaa
attcatcgcaccaacctgaaagttgttcgtgtctgtgccaagtctcgcgaggccatcgat
agtcctgttaatttcttggctctccacaatcaaattcgaaatatggagaccaacattgag
ttgaaaaagctgcagcaattgaaagacgagacaggcgaattgtcatcggccgatgaaaaa
cgctatagaactttgaagcgagccgctgaaaatcaacttctcgaggccgcagatgtaata
tgttgcacatgtgtaggtgctggagatgcccgcctgcagcgtattagattcacgtcgata
cttatcgatgaatcgatgcagtccaccgagccggaatgcatggtacccgtggtgttgggt
gccaagcagctgatcttggttggtgatcattgccaattgggtcctgtggtcatgtgcaag
aaagccgcacgtgctggtctctcgcaaagtttgttcgaacgtttggtggtcttgggtata
agaccattccgcttagaagttcaataccgtatgcaccctgagttgtcgcaattcccctcg
aacttcttctacgaaggttcgctgcagaatggagtgtgtgcagaagatcggaagctcaaa
atcgatttcccctggcctcagccagacaggccaatgttcttccttgttacccagggtcaa
gaggaaattgcaggatcgggtacctcatatctgaatcgtaccgaggcagcaaatgtggag
aagatcactacacgcttcctgaaggccggcgtcaaaccagaacagattggcattattact
ccatacgaaggccaaagagcctacttggtccagtacatgcagtatcagggaagtttacac
tccaaactgtaccaagaaattgaaatcgcaagtgtggatgccttccagggcagagagaag
gatatcataataatgtcctgtgtcagatcgaacgagaagcagggcattggttttctcagt
gatccaaggcgtttgaatgttgctctgacccgatcgaaatatggcaccattattgttggc
aatccgaagatactttctaaacagcccctctggaatcaccttttgaatttctacaaggac
cgcaaagtcttggttgaggggtcgttgaacaacttgagggagtccatgatacaattccaa
aaaccgaaaaaacttgtaaataccctaaatatgggtgcacatttcatgagtaccatgatg
gcagatgctcgcgaagcaataatacccggctccttctatgaccgctctgggcaatttgga
tacactggcaccacaggatccaacaactatggctacaactttggcaacaacctgattggt
ggaaacaactcagcctttggttttggcaatacttcgcacatgcaaaatatgggaggcctg
ggaaatacctcacacttgagcagttttatgaatccccaaggaggcggagcaggcagtgga
gcgatgggaggtggttttggtgcaccaggctctcagcgccataatatcaaccaattgact
aactccggactcaataatggccccaataaccaacagtggcataacttccaacatgattcg
atttcgtacatatccacggagagggctcaagcagctatgaataacatgccagtgcctgtt
ggcatgttcatgaacatgagtaacataccaccacgtttctataatcaacaccaacaagcc
atacaggctgcagctaaacaagggcgacgggcgggtggcagtgtcggtcccattggctca
tctgccatgaacatgcccagcaataattcgaacaaaaatgtggcaaacaaagctccgggc
aagggaaggaatacgaatactaccagtagtgccacaactaatgccttgacctcgagtgct
gctgcttccactcaatcttcacaaaactcggcggccattttgacccagaagaacatgtcg
cagcaaatgagtcaaaatgtcttcactggcttatcacaacaaccagaactttctcaagat
tttggtcagatatcacaaatggatggtatcttatcgcaagatgtcggtttcggaactgac
gcacttaacaatgatcgcttaaacttaggacttaattcacagagccaattctcacagccc
tattga
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integrated database retrieval system
