Metabacillus dongyingensis: K8L98_08830
Help
Entry
K8L98_08830 CDS
T07997
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mdg
Metabacillus dongyingensis
Pathway
mdg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K8L98_08830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdg03400
]
K8L98_08830
Enzymes [BR:
mdg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K8L98_08830
DNA repair and recombination proteins [BR:
mdg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K8L98_08830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UAL53857
LinkDB
All DBs
Position
complement(1783595..1785433)
Genome browser
AA seq
612 aa
AA seq
DB search
MYVKPMLPTLSAGIPEGEKWSYEVKYDGFRAILSISEEGITFTSRNGKDLGALFPEIMNA
VQSIFDRLKDFMPCIFDGELVSLKNPYKASFEVIQQRGRLRAKDKINQEAETNPCQYLIF
DLLECKQEKTAFLDYLSRKTLLSNIASSCGLPLEPRKSNQLIQYVPSFAGHEALWSGIRA
LDAEGMIAKENKSKWEAGVRTKSWLKIKNYKYALFFIIGYDKKNGYFKAGVFKGENVIDT
GVFSHGLEGSDRDSLIRILKENKESEDSQWITISPAICVELQFLELYKNQLREPSFSAFR
FDLSPHECTWEQLKLKAVSFHEEVQITHPDKPLWENPLRTKTDYLAYLVEVSDYMLPFLK
NKSLTVIRYPHGTSDEAFYQKNCPDYAPEFVETAKQDGIDYILCNDISTLIWLGNQLSLE
FHIPFQTYDSSCPNEIVFDLDPPSRADFHMAVSAALEMRKLFDSFGLASFPKLSGGKGIQ
IHIPITNNRFSYDQTKKFTSFIAAYLVNAYPEMYTIERLKKNRGNRLYVDYIQHAEGKTI
IAPYSVRGNPEDAYAAAPLFWDEVVQDLKVNQFTMDYVAERIKKGCPFQDYFSSPQDEVI
QQVLDFIEKNKQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtatgttaaaccaatgcttccaacactttcagccggaatacctgaaggagaaaagtgg
agctatgaagtcaaatatgatggattcagggcaattttgtccatttcagaagaaggcatc
acgtttacaagccgaaatgggaaagatttaggtgctcttttccccgaaatcatgaacgct
gtccaatctatctttgacaggctgaaagattttatgccgtgcatatttgacggcgagctt
gtctcattaaaaaatccatataaagcatcctttgaagtcattcagcagcgcggaaggctg
agggcaaaagacaagatcaatcaagaggcagaaacaaatccatgtcagtatttaatcttt
gaccttcttgaatgcaaacaggaaaaaacagcttttcttgactatctttcacgaaaaacg
ctcttgtctaacatcgcttcatcatgcggactgcctcttgaaccacgtaaaagcaatcag
ctcatccaatacgttccttcctttgcgggccatgaggctttatggagcggcattcgagca
ttagacgcggaaggcatgattgcaaaagaaaataaaagcaagtgggaggccggagtgcgc
acgaaatcctggctgaaaataaaaaattacaaatatgctttgtttttcattataggatat
gacaagaagaatgggtattttaaagcgggtgttttcaaaggagagaatgtgatagacacg
ggtgttttttctcatgggctggagggatctgaccgagactctttaattaggattctaaag
gaaaataaggagagcgaggattcacaatggatcacgatttcccctgcgatctgcgtagag
ctgcaatttttggagctctataaaaatcagctgcgtgagccctctttttctgctttcagg
ttcgacctgtccccgcatgaatgcacctgggagcagctgaagctgaaggctgtttcattt
cacgaagaagttcagatcacacaccctgataaaccgctgtgggaaaatccactgcggaca
aaaactgactatcttgcttatttagtggaggtttctgactatatgcttcctttcttgaaa
aataaatctctcacggttattcgatatccgcacggaacctctgatgaagccttttatcaa
aaaaattgtccggattatgcgcctgagtttgtggaaaccgcaaagcaggatggaattgac
tatatcttgtgcaacgacatctcaactttgatctggcttggaaatcagctttccctggaa
tttcatattcctttccagacttatgattcttcctgtccgaatgaaattgtctttgattta
gatccgccatcgagggctgattttcacatggctgtctcagcagcgctcgaaatgcgcaaa
ctctttgactcattcggacttgcttcattcccaaaattatcaggcggaaaaggaattcaa
attcatattcccattaccaataatcggttttcatatgaccagacaaaaaagtttacatcc
tttattgctgcatatttagtgaatgcatacccagaaatgtatacgatcgaacggctcaaa
aagaaccgcggaaaccggctgtatgtcgactacattcaacatgctgaaggaaaaacaatc
attgcgccctattctgtcagagggaatcccgaagatgcatatgcagcggcccctttattc
tgggatgaagtggtgcaagatttgaaggttaatcagtttactatggattatgtagcagag
cggattaaaaagggctgcccatttcaagattacttctcttcacctcaggacgaagtgatt
cagcaggtgttagattttatagagaaaaataagcagtaa
DBGET
integrated database retrieval system
