Methylomonas sp. DH-1: AYM39_08850
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Entry
AYM39_08850 CDS
T04396
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYM39_08850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_08850
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYM39_08850
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYM39_08850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_30
HEM4
AAA_22
Kinesin
Motif
Other DBs
NCBI-ProteinID:
ANE57675
UniProt:
A0A172UEB2
LinkDB
All DBs
Position
1936323..1938362
Genome browser
AA seq
679 aa
AA seq
DB search
MEEPPVKGKGLQQKPFKIQSRYQPAGDQPAAIRQLVEGINDGEVHQTLLGVTGSGKTFTI
ANVIQQTQRPAMIMAPNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYIPASDTFI
DKDASLNEHIEQMRLSATKALLERRDTIVVATVSAIYGLGEPESYFQMVLHLVRGDMIKQ
RDILRRLAEMQYTRNDIELRRATYRVRGDVIDVFPAESEEQALRIELFDDEIERLSMFDP
LTGEVTQRLARFTLYPKSHYVTPRDQLLSAVEKIKLELVERLAQLREDHKLVEAQRLEQR
TLFDIEMIMEVGYCSGIENYSRHLSNRTEGESPPTMFDYLPKDALVIIDESHVTVPQIGA
MYKGDRSRKETLVEYGFRLPSALDNRPLRFEEFERICGQRIYVSATPGGYEKEHSGAVVE
QVVRPTGLVDPIVDVRPATSQVDDLLSEINKRIAVQERVLVTTLTKRMSEDLTDYLMEHG
IKVRYLHSDIETVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR
SLTSLIQTIGRAARNANGKVILYGDKITRSMQLAIDETERRRAKQIEFNTQHNIQPRTVF
KSVTDILELAIPGSGGSISAARAKVAEPAGNYKALTPKQAAKALKQLEEKMYQHAKNLEF
EDAARIRDQIKLLQAEMSV
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaaccgcctgttaaaggcaaaggcttacagcaaaagccgttcaaaattcaaagc
cgttaccaaccggccggcgaccagcctgcagcgattcggcaactggttgagggcatcaac
gatggcgaagtgcaccaaaccctgcttggcgtgaccggttccggcaagacttttaccatc
gccaacgtgatacagcagacgcagcgaccggcgatgatcatggccccgaacaagaccctg
gctgcccagctctacggcgagatgaaggagttttttccggagaacagcgtcgagtacttt
gtttcctattacgactactaccaaccggaagcctatattccggcttccgataccttcatc
gacaaggatgcgtcgctgaacgaacatatcgagcagatgcgtttgtcggccaccaaggcc
ttgttggaacggcgcgataccatcgtcgtcgccaccgtatcggcgatttacggcttgggc
gagccggaatcgtatttccagatggtgctgcatttggtgcgcggcgacatgatcaagcaa
cgcgacattctgcgccggctggcggaaatgcaatatacccgcaacgatatcgagctgcgc
cgcgccacttaccgagtgcgcggcgatgtgatcgacgtgtttccggccgaatcggaagag
caggctttgcgtatcgaactgttcgacgacgagatcgaacgcctgtcgatgttcgatccg
ttgaccggcgaagtgacccagcgtctggcccggtttacgctgtatccgaagagccactat
gtcaccccgcgtgaccagttgctcagcgcggtcgaaaaaatcaagttggagctggtggag
cggctggcgcagttacgcgaagaccataaactggtcgaagcccaacgcctggaacagcgt
acgctgttcgatatcgaaatgatcatggaagtcggctactgctccggcatcgaaaattac
tcgcggcatttgtcgaatcggaccgaaggcgagtctccgccgaccatgttcgattatcta
ccgaaagacgctttggtcatcatcgacgaaagccacgtcacggtgccgcagatcggggcg
atgtacaaaggcgaccgttcgcgcaaggagactctggtcgaatatgggttccgattgccc
tcggcgctggacaaccggccgctgcgtttcgaagagttcgagcgcatttgcgggcagcgg
atttacgtgtcggccacgccgggcggttacgagaaggaacactccggcgccgtggtggag
caagtggtgcgtccgaccggtttggtcgatccgatagtggacgtgcggccggccaccagc
caagtcgacgatttgctgtcggagatcaacaagcggattgcggtgcaggaacgggtgttg
gtgacgacactgaccaaacgcatgtcggaggatttgaccgattacctgatggagcacggc
atcaaggtcaggtacctgcattcggatatcgagacggtggagcgggtggaaattatccgc
gatttgcggctgggcgtgttcgacgtgctggtcggcatcaatctgttgcgcgaggggctg
gatattccggaagtctcgctggtggcgattctggatgccgacaaggaaggttttttgcgt
tcgttgacctcgttgatccaaaccataggtcgcgccgcgcgtaatgccaacggtaaagtg
attttatatggtgacaaaatcacccgctcgatgcaattggccatcgacgaaaccgagcgt
cgccgggcgaagcagatcgagttcaatacacagcataatattcagccgcgcaccgtattc
aaatcggtcaccgacattctggaactggccataccgggttccggcggttcgatcagcgcc
gcccgcgccaaggtggcggaaccggccggcaactacaaagcgttgacgccgaagcaggcg
gccaaggcgctgaagcaactggaagagaagatgtaccagcacgccaagaatctggaattc
gaggatgctgcccgcatccgcgaccaaatcaaactgctgcaggcggaaatgtcggtctga
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