Methylorubrum extorquens DM4: METDI5120
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Entry
METDI5120 CDS
T00947
Name
(GenBank) hypothetical protein; putative hemolysin-type calcium-binding repeat domain
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi00040
Pentose and glucuronate interconversions
mdi01100
Metabolic pathways
mdi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
METDI5120
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
METDI5120
Enzymes [BR:
mdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
METDI5120
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HemolysinCabind
Beta_helix
NosD
Internalin_N
DUF6383
Motif
Other DBs
NCBI-ProteinID:
CAX26735
UniProt:
C7CKG5
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All DBs
Position
5040714..5042207
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AA seq
497 aa
AA seq
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MPAGQTYSTTPIRTTYDGQVIENLDLWVSDGDAIRVDHDNVVIRNVTIHHADGNGIVVED
VSGVTVQNSLIVNSDPPTGNGGETDAETTGIRVVNASGFTASHVTLQDSGTGIYLGQSPN
AKLSYIEGHNFHGPFPGGQLVQFYQSPNGSLSDFAVTNDASHSHVEDNVSIIDSQNVSIT
NGVIDGNNSPSGAGVMFEGNSQGGHVQNVDVIHMSNGGFSSYSDDVSFVDTRSFDNDAGD
QGRGASLSNGLIWNATGHNVTIEDSTYTDPGVANNIVWGTSSAGADVSAAPSATPMTPIH
NVFDGTATGSAPVADPVPTPAPTPAPTPAPTPAPSPAPTPAPSPTAPTATAPAGTGIDRD
GTASSETMTGSRFADDLDGRGGNDTLNGLAGDDRLYGGAGNDRLDGGSGTDHLWGGTGAD
HFVFKAGNGTDWVEDFQLSGTAQDVVEVSKAMFGSFNALLAAAHDVGSDVAITSGADTLW
LADVHKAQLSAGDFLFV
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcggggcaaacctatagcaccacccccatccgcacgacgtacgacggacaggtt
atcgaaaatctggatctctgggtctccgacggcgacgccatccgcgtcgatcacgacaac
gtcgtcatccgcaacgtcaccatccaccacgccgacggcaacggcatcgtcgtcgaggac
gtcagcggcgtcaccgtccagaacagcctcatcgtcaattccgatccgcccacgggcaac
gggggcgagaccgatgcggagaccaccggcatccgggtcgtcaacgcgtccggcttcacc
gcgtcgcacgtgacgctgcaggacagcggcaccggcatctatctcggccagtcgccgaac
gcgaagctctcctacatcgagggccacaacttccacgggccgttccccggcggtcagctc
gttcagttctaccagtcgccgaacggcagcctctcggatttcgctgtcaccaacgatgcg
agccactcgcatgtcgaggacaacgtctcgatcatcgacagccagaacgtctcgattacc
aacggcgtgatcgacggcaacaactcgccgagcggtgccggcgtgatgttcgagggtaat
tcgcagggtggccacgtccagaacgtcgacgtgatccacatgagcaatggcggcttctcg
tcctactcggacgacgtgtccttcgtcgacacccgctccttcgacaacgatgccggcgac
cagggccgcggcgcgtcgctgtcgaacgggctgatctggaacgcgaccggccacaacgtc
acgatcgaggactcgacctacacggacccaggggtcgccaacaacatcgtctggggaacc
tcctcggccggcgcggacgtgtcggcagcgccctcggccacgccgatgacgccgatccac
aacgtgttcgacgggacggcgaccggcagcgctccggttgcggatccggtgccgacgcct
gccccgactcctgcgccgaccccggccccgactccggcgccgtccccggctccgactccg
gcgccgtccccgacggccccgacggccacggccccggccggcacgggcatcgaccgggat
ggcacggcgtcctccgagacgatgaccggctcgcgcttcgctgatgacctcgacgggcgg
ggcggcaacgacacgctcaacgggctcgccggcgacgaccgcctctacggcggggccggc
aatgaccggctcgacggcggcagcggcaccgaccacctctggggcggcaccggcgcggac
cacttcgtgttcaaggccggcaacggcaccgactgggtcgaggacttccagctcagcggc
accgcgcaggacgtcgtcgaagtgagcaaggcgatgttcggttcgttcaatgccctgctc
gccgcggcccatgatgtcggctccgatgtcgccatcacctcgggcgccgacacgctgtgg
ctcgccgacgttcacaaggcgcagctctcggccggcgacttcctgttcgtctga
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