Malus domestica (apple): 103408851
Help
Entry
103408851 CDS
T03194
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mdm
Malus domestica (apple)
Pathway
mdm03022
Basal transcription factors
mdm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103408851
09124 Replication and repair
03420 Nucleotide excision repair
103408851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103408851
03400 DNA repair and recombination proteins [BR:
mdm03400
]
103408851
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103408851
DNA repair and recombination proteins [BR:
mdm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103408851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
103408851
NCBI-ProteinID:
XP_008345891
LinkDB
All DBs
Position
5:44558038..44563799
Genome browser
AA seq
454 aa
AA seq
DB search
MPQVRIIAKNFMDMVAALPAMKLDKLYENAFICEAILRSLPPLAKKYVLQLLCIEVPVTA
KSMEEWVLPDGVSKHRVAIDRLIQLRIFTETVDRKRETTYTLNPIFQTNLKKLLVHGVVL
PREPMPSNITVRLPSLEDLQAFALEQWECFLLQLINSSQSERPSNISSSMMKTFQRGLLS
QRDREAPRLTDSGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHVTGE
AYNINTLNERQKNIIKDLADLGLIKLQQGRKDSWFIPTELATNLSVSLTDSSSRKQGFVV
VETNFRLYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITGEQIISFL
QQNAHPRVAERVPSVPENVTDQIRLWETDLNRVEMTPAYYYDEFPTRELLEGASDFARGY
NALLWEDVNSKKMRLVVKAENHVHMREYLGRQRQ
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaggatcatcgcgaagaatttcatggacatggtggccgccctgcccgcc
atgaagctcgacaagctatacgagaatgcattcatctgcgaagcaattctcaggtctctg
ccaccgttggctaagaaatatgtcttgcaactgttgtgcattgaagttccggtgactgcc
aagtcaatggaggagtgggtgcttcctgatggggtctcgaagcatagagttgcaattgat
cggctgattcaattgagaatatttactgaaactgtggacaggaagagggaaacaacctac
acactaaatcctatatttcagactaatctcaagaagcttctggtacacggtgtagttttg
ccgagagaaccaatgccttcaaatatcacagtgaggctcccaagcttggaggatcttcag
gcttttgccctagaacaatgggagtgtttcttgctgcaacttatcaactcatctcaaagt
gagaggccatcgaacatcagttcgtctatgatgaaaactttccagcggggtcttttgagt
caaagggatagagaagctccaagattaactgacagtggtttccagttcttgttgatggat
acaaacgcgcaactctggtacatcatcagagagtacatctctaactcggaggagcgtggg
ctagattctgcagatttgatttctttcctgctagaacttagttttcatgttacaggcgag
gcatataacataaatacattgaatgagaggcagaagaatataatcaaggatcttgcagat
ttgggactgatcaaacttcagcagggaaggaaagacagttggtttatacctactgaatta
gctactaatctatcagttagcttgacagactcatcatcgaggaaacagggatttgttgtt
gtggaaacaaacttcagactctatgcctactcaacatctaaattacattgtgaaatttta
cgtcttttctcaagggtagaatatcaacttccaaaccttatcgttggagcaataacaaaa
gaaagtttatatagtgcttttgaaaatggcatcactggagaacagataatttcttttctt
cagcagaatgcacatccacgcgttgcagagagagtaccatccgtacctgagaatgtcaca
gatcagattaggctgtgggaaacagatctgaatagggttgagatgactccagcttattat
tacgatgaatttccaacgagggaactcctcgagggtgcgtctgactttgcgcgaggctat
aatgctctgctgtgggaggatgtaaattcgaaaaagatgcgtttagtggtcaaggcagaa
aaccacgtgcacatgcgagaatatcttggacgtcaaaggcagtaa
DBGET
integrated database retrieval system
