Malus domestica (apple): 103413071
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Entry
103413071 CDS
T03194
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03082
ATP-dependent chromatin remodeling
mdm03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103413071
03083 Polycomb repressive complex
103413071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mdm03036
]
103413071
Enzymes [BR:
mdm01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
103413071
Chromosome and associated proteins [BR:
mdm03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
103413071
HDAC complexes
Sin3A-HDAC complex
103413071
BRAF-HDAC complex
103413071
REST complex
103413071
SHIP complex
103413071
MiDAC complex
103413071
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
103413071
Heterochromatin formation proteins
Other heterochromatin formation proteins
103413071
Chromatin remodeling factors
NuRD complex
103413071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Plasmod_MYXSPDY
Motif
Other DBs
NCBI-GeneID:
103413071
NCBI-ProteinID:
XP_008349785
UniProt:
A0A498INF2
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All DBs
Position
11:15494462..15500751
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDKIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFSNEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEVGEREGKFYAINVPLKDGIDDASFNRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNIPLLVTGGGGY
TKENVARCWTVETGVLLDSELPNEIPDNEYIKYFSPDCSLRIPNGHIENLNSKSYLSTIK
IQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERLDQNTQDKHIQRDDEYYEGD
NDNDHNMDDM
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcaaaggataaaatcgcctacttttacgacggggatgtgggtagcgtctacttt
gggccgaaccaccccatgaaaccgcaccggctatgtatgacccatcatctcgtcctctca
tatgatctccacaaaaagatggaaatttatcggccgcataaggcatatccggtggagctt
gcgcaattccattcagctgactatgtcgagtttctacaccggattacgcccgacacccag
cacttattctcgaatgaaatggcaagatataatcttggagaagattgccctgtatttgat
aacttatttgaattttgtcaaatttatgccggcggaacaatagatgctgcacgtagattg
aacaataaactttgtgacattgctattaattgggctggtggactgcaccatgccaaaaag
tgtgaggcatctggattttgttacatcaatgacttggtcttgggcatattggagcttcta
aaacatcatgcccgagttttatatattgacatagatgtgcatcatggtgatggtgtagaa
gaagctttttattttaccgatagggtgatgactgttagctttcacaagtttggggatctg
tttttcccaggaacaggtgatgttaaggaagtaggagaaagagaaggcaagttttatgcc
atcaatgtcccactaaaggatggaatagatgacgctagcttcaatagacttttcaagact
attatttccaaggttgttgagacatatctacctggcgcgatagttctccagtgtggagca
gattctcttgctggagaccgtttgggctgcttcaatctctctattgatggtcatgctgaa
tgtgttaggtttgtgaagaaattcaatatacccttactggttacaggaggtgggggatac
acgaaagagaatgttgctcggtgttggaccgtggaaactggggttcttcttgattcagaa
cttcccaatgagatcccggataacgagtacatcaagtatttttctccagactgctcgttg
aggattccgaatgggcatatagagaacctaaatagtaaatcatatcttagcacgattaaa
atacaagtcttggaaaatctccgttgcattcaacatgctcctagtgtacagatgcaagag
gttccaccagacttctatattcccgactttgatgaagatgaacagaaccctgatgaacgt
ctagatcagaacacccaagacaagcacattcagcgtgacgacgagtattacgaaggggac
aacgataacgatcacaacatggatgatatgtaa
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