KEGG   Malus domestica (apple): 103413071
Entry
103413071         CDS       T03194                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03082  ATP-dependent chromatin remodeling
mdm03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103413071
   03083 Polycomb repressive complex
    103413071
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mdm03036]
    103413071
Enzymes [BR:mdm01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     103413071
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     103413071
   HDAC complexes
    Sin3A-HDAC complex
     103413071
    BRAF-HDAC complex
     103413071
    REST complex
     103413071
    SHIP complex
     103413071
    MiDAC complex
     103413071
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     103413071
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103413071
  Chromatin remodeling factors
   NuRD complex
    103413071
SSDB
Motif
Pfam: Hist_deacetyl Plasmod_MYXSPDY
Other DBs
NCBI-GeneID: 103413071
NCBI-ProteinID: XP_008349785
UniProt: A0A498INF2
LinkDB
Position
11:15494462..15500751
AA seq 430 aa
MRSKDKIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFSNEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEVGEREGKFYAINVPLKDGIDDASFNRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNIPLLVTGGGGY
TKENVARCWTVETGVLLDSELPNEIPDNEYIKYFSPDCSLRIPNGHIENLNSKSYLSTIK
IQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERLDQNTQDKHIQRDDEYYEGD
NDNDHNMDDM
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgttcaaaggataaaatcgcctacttttacgacggggatgtgggtagcgtctacttt
gggccgaaccaccccatgaaaccgcaccggctatgtatgacccatcatctcgtcctctca
tatgatctccacaaaaagatggaaatttatcggccgcataaggcatatccggtggagctt
gcgcaattccattcagctgactatgtcgagtttctacaccggattacgcccgacacccag
cacttattctcgaatgaaatggcaagatataatcttggagaagattgccctgtatttgat
aacttatttgaattttgtcaaatttatgccggcggaacaatagatgctgcacgtagattg
aacaataaactttgtgacattgctattaattgggctggtggactgcaccatgccaaaaag
tgtgaggcatctggattttgttacatcaatgacttggtcttgggcatattggagcttcta
aaacatcatgcccgagttttatatattgacatagatgtgcatcatggtgatggtgtagaa
gaagctttttattttaccgatagggtgatgactgttagctttcacaagtttggggatctg
tttttcccaggaacaggtgatgttaaggaagtaggagaaagagaaggcaagttttatgcc
atcaatgtcccactaaaggatggaatagatgacgctagcttcaatagacttttcaagact
attatttccaaggttgttgagacatatctacctggcgcgatagttctccagtgtggagca
gattctcttgctggagaccgtttgggctgcttcaatctctctattgatggtcatgctgaa
tgtgttaggtttgtgaagaaattcaatatacccttactggttacaggaggtgggggatac
acgaaagagaatgttgctcggtgttggaccgtggaaactggggttcttcttgattcagaa
cttcccaatgagatcccggataacgagtacatcaagtatttttctccagactgctcgttg
aggattccgaatgggcatatagagaacctaaatagtaaatcatatcttagcacgattaaa
atacaagtcttggaaaatctccgttgcattcaacatgctcctagtgtacagatgcaagag
gttccaccagacttctatattcccgactttgatgaagatgaacagaaccctgatgaacgt
ctagatcagaacacccaagacaagcacattcagcgtgacgacgagtattacgaaggggac
aacgataacgatcacaacatggatgatatgtaa

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