Malus domestica (apple): 103422116
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Entry
103422116 CDS
T03194
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mdm
Malus domestica (apple)
Pathway
mdm03022
Basal transcription factors
mdm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103422116
09124 Replication and repair
03420 Nucleotide excision repair
103422116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103422116
03400 DNA repair and recombination proteins [BR:
mdm03400
]
103422116
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103422116
DNA repair and recombination proteins [BR:
mdm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103422116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Tfb4
IBR
VWA_3
Motif
Other DBs
NCBI-GeneID:
103422116
NCBI-ProteinID:
XP_008358377
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Position
3:complement(9953638..9956865)
Genome browser
AA seq
420 aa
AA seq
DB search
MNNGEQRRLNGEAEEDEDDDDANNGGLAAWERAYADERSWESLQEDESGLLQPIDNQSLK
HAQYRRRLRAASTARIQKGLIRYLFIVIDLSKAAAEMDFRPSRMGVVAKHIEAFIREFFY
QNPLSQVGLVTVKDGVAHCLTDLGGSPESHVKALMGKLECSGDSSLQNALDLVHGYLNQI
PSYGHREVLILYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAEIFICKHLCQETGGLY
YIALDEAHLKELILEHAPPPPAIAEFAIANLIKMGFPQRAAEGSVAICSCHKEAKVGAGY
TCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVPLSLLIDQQNKFPRA
CFGCQQNLLGPGNKPGLRVACPKCKQHFCLECDIYIHESLHNCPGCESTRHSRIPNINEG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacggcgaacaaagacgcctaaacggagaagctgaggaagacgaagacgacgac
gacgcaaacaatggtggccttgctgcctgggagcgagcttacgccgacgagaggtcgtgg
gagtctctgcaggaggacgagtccggacttctccagcccattgacaaccagtccctcaaa
catgcccaataccgccgccgccttcgcgccgcctccactgcccgaatccaaaagggtctc
attcgttatcttttcattgttatcgacctctctaaggcagctgcagaaatggattttcga
ccaagccgaatgggggtcgttgcgaaacatattgaggctttcataagagagtttttctac
cagaatccgcttagtcaagttggcctggtgactgtaaaagatggtgttgctcattgcttg
acggatcttggtggcagtcccgagtctcatgttaaagctttgatgggtaaactggaatgc
tctggtgactcgtccctacagaacgcattggatcttgtacatgggtatcttaatcagatt
ccatcatatggtcatagagaagtattgatcttatattcagctctcagtacctgtgatcct
ggagatataatggaaactatccagaagtgtaagaaatccaaaattaggtgctcagttatc
ggtctctcagcagaaattttcatatgcaaacatctatgccaagaaaccggtggcttgtac
tatattgcattggatgaggcacacttaaaagagttgatattggaacatgcacctccacct
ccagcaatagcagaatttgcaattgctaacttgataaagatgggcttcccacaaagagca
gcagagggctctgtggccatttgttcatgtcacaaggaggcaaaggtaggagctggatac
acttgtcctaggtgcaaggctcgtgtttgtgagctacctacagaatgtcgcatttgtggg
ctgacactcatttcttcccctcatttagcaaggtcttatcatcatctctttcccattgta
ccttttgacgaggtccctctgtcactactaattgatcaacaaaacaagtttcctagagct
tgtttcggctgccaacaaaatcttctcggtcctggaaacaagcccggccttcgggtcgct
tgcccaaaatgcaaacagcacttctgccttgaatgcgacatatatattcatgaaagcttg
cataactgcccaggttgtgagagcactaggcattccaggattccaaatataaatgaagga
tga
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