Malus domestica (apple): 103446682
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Entry
103446682 CDS
T03194
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mdm
Malus domestica (apple)
Pathway
mdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103446682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103446682
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103446682
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103446682
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103446682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103446682
NCBI-ProteinID:
XP_008384032
LinkDB
All DBs
Position
10:complement(40021860..40028341)
Genome browser
AA seq
975 aa
AA seq
DB search
MDSERLTLSRENPRVAFSPHTAGKAMPGAELAQKPQPPTPIVDRFRALLKQREEDLRVSP
DDEVSPPSTEEIVHLYEMVLSELIFNSKPIITDLTIIAGEQRDHGRGIANAICARILEVP
VEHKLPSLYLLDSIVKNIGREYAKFFSSRLPEVFCEAYRQVHPNQHPAMRHLFGTWSAVF
PPSVLRRIEEQLQFSPQANQQSSGLPPLRTSESPRPAHGIHVNPKYLRPLDSSDVDGVVS
KRLNSTGSVSHSPFALGSNQLHPSSTARLARSSSPSNIGLDRSLPSAVDEYAAEQSPRRF
VERASPSNSVFDYRLGGAMGKDEESNEWRRKRYLDGSQKWFDTSAAYNGVDHQNPRALID
AYGKDSADRSLNDKPLLVGQLGLNGLDHKATPMSWQNTEEEEFDWEDVTPNLADHGRGND
FLASTVPPSRSYRASHGTQNASSLEPDVRSTWSSQAHPPSAEQSSIIAEDSVPSLGFGRG
SSGAVSRFQSEKNHNMGSRYPQEAWNMPFHHLQPLQNPLNAKGRGGNIQTPFVTSGISSG
GEKMSAFNDKLLDVDTRLHGPITSRMGSSSVDSGTADSRSMMPVSMGLRPPVNAQNSHPP
RVHSVFAMQNQRNPYGSINYSNTVKNQGPYNPSYMPEQQLDGYENKESRSTKSTQVPQYR
PLQPQYRPPQEARENIFSSAETQVPSYLGVPPLNHGYTLRGPVPRQHLGIPTPYNPNGSS
QFSLPPLPPGPPPPSQGILSVQNPGSVVSSNQPGNSYSGLISSLAQGLISLTKQSPVQDS
VGVEFNADLLKVRHESVISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRK
QKPSRKWFVNTSMWLTGAEALGTEAVPGFLPAETIVEKKSDEEMAVPADEDQNSCALCGE
TFDDFYSDENEEWMYKDAVYMNAPDGATGGMDRSQLGPIVHAKCRSESSVVSPEGFGQDQ
RGIIEEGSQRKRLRS
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggactcggaaaggctcacactttcccgagaaaaccctagagtcgctttttccccgcac
accgccggaaaggccatgcccggtgccgagttagctcagaagccccagcctccgactccg
atagtggaccgattcagggctctgctcaagcagcgggaggaggacctcagggtttcgccc
gacgacgaggtatcgccgcccagcaccgaagaaatcgtccacctttacgagatggtattg
tcggagctcatctttaattcgaagcccatcattaccgatctcaccatcatcgccggcgag
cagagagaccacggaaggggcatcgccaacgccatctgcgcccgcattctcgaggtcccg
gtcgagcataaactgccttcactgtatcttttagacagtattgtcaagaatattggccga
gaatatgccaagtttttctcttcccgtcttcctgaggtcttttgcgaggcatacaggcaa
gtacaccctaaccagcaccctgccatgcgccacctctttggcacttggtcagcagtgttt
ccaccttcagtccttcgcaggattgaagagcaactgcaattttctccgcaagcaaaccaa
caatcatcaggattaccacctttgaggacttctgaatctcctcgaccagctcatggcatc
catgtcaatccaaaatatttacgtccgttggacagttcagatgtagatggtgttgtatca
aaaagattaaactcaacaggaagtgtgagtcattcaccttttgccctggggtccaatcaa
ttacacccatcttcaactgctaggcttgcaagatcttcgtcgccttctaatattgggctt
gataggtctttgccatcagcagttgatgaatatgcagcagaacagtctccaagaaggttt
gttgagagggcttctccatctaattccgtgtttgattatagacttggtggagcgatgggt
aaggatgaggagtcgaatgaatggcggagaaaacgctatcttgatggtagtcagaagtgg
tttgatacttctgctgcatataatggagttgaccatcagaacccaagagctttaattgat
gcatatgggaaggacagtgcagatagaagtttaaatgataagcctctgctggttgggcag
ctgggcctgaacggtctagatcataaggcaactccaatgtcatggcagaatactgaagag
gaagagtttgattgggaagatgtgaccccaaatttagcagaccatggtcggggtaacgat
ttcttggcttcaactgtaccgccttctagaagctacagggcaagccatggaacacagaat
gcaagctccttggagccagatgttaggagtacttggtctagtcaggcacatccaccttca
gccgaacagtcctctattatagctgaagattcagttccctcacttggtttcggtcgtgga
tcatcgggtgctgtgtctcgatttcagtctgagaaaaatcataatatgggttctcgctac
cctcaagaagcctggaatatgcctttccatcacttgcagcctttgcagaatccccttaat
gccaaaggaagaggagggaacattcagacgccctttgtgacaagtggtatatcttcaggt
ggtgagaaaatgtctgcctttaatgacaagcttctagatgttgatacacgacttcatggg
cccattacatcaagaatgggttcctctagtgttgactctggtactgctgactctcgatct
atgatgccagtgtcaatgggtttaaggcctccagtaaacgcgcaaaattctcaccctccc
cgagtgcactcagtttttgcaatgcagaaccagaggaatccgtacggttcaataaattat
agcaatactgtaaaaaatcaaggcccatataatccttcatacatgccggagcagcagtta
gatggctatgaaaacaaggagtcaaggtcgacaaagtcaactcaggtgccacaatatcgt
cccttacaaccacagtatcgtccacctcaggaggcacgggagaatattttttcgtctgca
gaaactcaggtgccatcttatttaggggtaccacccttaaatcatggatacactttgcga
ggtcccgtacctcgtcaacacttgggcataccaaccccctataacccaaatggcagttct
cagttctccttgccacctctaccaccaggtcctcctcctccctcgcaaggcatactttcc
gtccaaaaccctggttcagttgtctctagcaaccagcccggcaattcctattctggtttg
attagttctctggctcaaggtttgatctcattgacaaagcaaagccctgtccaggattct
gtaggagtcgagtttaatgccgaccttctcaaggtgcgtcatgaatctgtaataagtgcc
ctatatggtgatctccctagacaatgcacaacctgtggccttaggttcaagtgccaagaa
gagcacagtagtcatatggattggcatgtaacaaagaatcgtatgtctaaaaaccgcaag
cagaagccctctcgcaaatggtttgtaaatacaagcatgtggctcactggtgcagaggca
ttgggtactgaggcagtccctggatttttgcctgccgagaccatagtggaaaagaaaagt
gatgaagaaatggctgttcctgccgatgaggatcagaattcgtgtgcattatgtggagag
acttttgatgacttttatagtgatgagaatgaggagtggatgtataaagatgctgtgtac
atgaatgcacctgacggagcaacaggaggcatggataggtcacaattaggtcctattgtg
catgctaaatgcagatccgagtcaagtgtggtctcccctgaaggttttggacaagatcaa
aggggaattattgaagagggtagtcaaagaaaacgattgcggagttaa
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