Malus domestica (apple): 103451039
Help
Entry
103451039 CDS
T03194
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103451039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdm03400
]
103451039
Enzymes [BR:
mdm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103451039
DNA repair and recombination proteins [BR:
mdm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103451039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
103451039
NCBI-ProteinID:
XP_008388689
LinkDB
All DBs
Position
16:complement(27706619..27723452)
Genome browser
AA seq
1162 aa
AA seq
DB search
MATDETKFSVLCSLFNWMQKSKTSTLKRSKFRRFLDNFCKPANYFSAIRLILPSLDRERG
SYGLKESVLATCLIDALGIARDSEDALRLINWRKGGAKTGANAGNFSLVAAEVLQRRQGL
SSGGLTIKELNDLLDRLASSENRAEKTSVLSTLINKTNAQEMKWIVMIILKDLKLGTSEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLSDRNQRHKRQDIEVGKAVRPQLAMRVGDANIAW
KKFHGKEVVVECKFDGDRIQIHKNGTEVHYFSRNFLEHSEYTHAMSDIIVENVLADRCIL
DGEMLVWDTSSSRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQSLKER
HELLQKVVNPLKGCLEILVPNRGLNAHCNEGEPCWSLIATSVDDVEKFFKDTIENRDEGI
VLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGVVAQFLVGLAER
PVPNTYPRRFVSFCRVGTGLSDEEIEAVATKLKPYLRKYEYPKKAPPSFYQVTNNSKERP
DVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFIELV
QAGNGTTQRGTDYGGLQDTKKKSKKSPRKEEKRNLSIVPSHFVQTDVSGVKEDTLLFSNM
MFYFVNVPPTHSFDSLHKLVVENGGTFSMNLNNAVTHCVAADGKGIKYQAAKHHGDIIHI
SWVLDCCSQKKLLPLQPKYYLFLSDSSKKLQEEIDDFSDSYYWDLDLAEIKQLLINIHRS
EDSEVVNYYKKKYCPVERWSRFHDCCIYFKSSIHSLKPDWEVVLGFTLRRLRIEVLRGGG
RVTDSLVHATHLVVLSVQGPDGFETLLRSFTEADKRYLHSKRLHIVGSQWLEDCLERDQR
LQEETYSLKPYGLEESNVEEWKHDMGLEEAPCDVDAVENHSSSFPNRKGKEIEVKAAPEN
CKILDSPERGSKRKRGRPARTSLNKGKSTVNQARRAWARIGRKPAKISGNESEESGSHDN
TSLGEEVDLGERIHGTVGQESIDIQENEAMKDSELLQRGKAVEQDVAEDIRIEEPYKIPE
IKMMEKHNVQESEKPEELEATADPVEAMLFDMIPSLGMKKAETTYTSTRDEKPARDPIPN
AGPSKKKKVSYKDIASELLKDW
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgacgagaccaagttcagcgtgctctgcagcctcttcaactggatgcagaaa
tccaaaacctcaaccctaaagcgttccaaattccgcagatttctcgacaatttctgcaaa
cccgccaattacttcagcgccattcgcctcattcttcccagcctcgaccgcgagcgtggc
tcctacggcctcaaggagtccgtgcttgccacctgcctcatcgacgccctcggcatcgcc
agagactccgaggacgctctccgcctcattaattggcgcaaaggtggcgccaagaccggc
gccaatgccgggaacttctccctcgtggcggcggaggtgttgcaacgtagacaggggttg
agttcaggtggactaacaatcaaggagttaaatgacttgcttgatcgtttagcttcgagt
gaaaacagggcagagaagacttcagttctttcaaccttgataaacaagacaaatgcacag
gaaatgaagtggattgtcatgatcattcttaaagatctgaagctgggaactagtgaaaag
agcatctttcacgaatttcatccagatgctgaagatttgtttaatgtcacatgcgacttg
aaattggtctgtgaaaagctcagtgatagaaatcagcgccataaacgccaggacattgaa
gttggaaaagctgtgcgcccacaactagctatgagagttggtgatgcaaatattgcatgg
aaaaagtttcatggtaaggaagtggttgttgagtgtaaattcgatggcgatcgcatccaa
attcataagaacggaactgaagtacattacttctcaaggaattttcttgagcactctgaa
tacacacatgcaatgtcagacattatcgtagaaaatgtgctggctgataggtgtattctt
gatggtgagatgttggtctgggacacatcttctagtcgttttgctgagtttggttcaaat
caagaaatagccaaggcagcaagggacgggcttgacagtgatagacagttgtgctatgtt
gcattcgatatcctctatgttggagatactagtgtgattcaccagagcttgaaggaacga
catgagcttctccagaaagttgtgaatccattgaagggttgtttagagattttagtaccc
aatcgtggtcttaacgctcactgtaatgaaggggaaccttgctggtcgcttattgctact
agtgtggatgatgttgagaagtttttcaaagataccatcgaaaatagagatgaggggatt
gttttgaaggaccttggttcgaaatgggaacctagtgatcgtagtggaaaatggttaaaa
ttaaagccagactacattcgtgcaggttctgatctggacgttcttatcataggaggatac
tatggctctggacgtcgtggaggagtggtagctcagttcttggtgggtcttgctgagcgt
ccagttccaaatacatatcctagaaggtttgtatccttttgcagagtgggcactggactt
tctgatgaagagatagaagctgttgcaacaaaattaaagccgtatttgaggaaatatgag
tacccaaaaaaggcaccaccaagtttttatcaagtaacaaacaattctaaagagagacca
gatgtttgggttgaaagccctgagaaatcaataatactttctataacaagtgacatcaga
actataaagtctgaggtttttgctgcaccatacagcctgagatttccacgtattgatcgt
gttagatatgataaaccttggcatgaatgccttgatgtgcagtcatttatagagcttgta
caagcaggcaatgggaccacacaaagggggacggattatggtggtctgcaggatactaaa
aagaaaagcaagaagtcccctagaaaggaagagaaaagaaatctgtctattgtcccctct
cattttgttcagactgatgtttcgggcgtgaaggaggacacattactattttcaaatatg
atgttttactttgttaatgtgcctcccactcattcttttgattccttgcacaagctagtt
gttgagaatgggggtactttctctatgaatttaaataatgctgttacacactgtgttgca
gctgatggcaaagggatcaagtatcaggcagcaaagcatcatggagatatcattcatatc
tcttgggtgttggattgttgttctcaaaagaaactccttccattacagccaaagtactat
ctcttcttatctgactcttctaagaagttacaagaagagattgatgatttttctgactcg
tactactgggatcttgaccttgcggagataaagcagcttttaatcaacattcatagatca
gaggactccgaagttgttaactattacaagaaaaaatactgtccggtggagagatggtct
cgctttcatgactgctgcatttactttaaatcctcaattcattccttgaagccggattgg
gaagttgtcttaggattcacactgagaaggttgaggattgaagttctcaggggtggtggc
agagtcactgacagtcttgttcatgcgacccatttggtagtcttgtccgtgcagggtcct
gatggatttgaaactttattacgaagtttcactgaagcagacaaacgatatctgcatagc
aaaaggttgcatattgttggatctcaatggttggaagactgcttggaaagggaccaaaga
ttgcaagaggaaacatatagcttaaaaccctatgggttggaagaatccaacgttgaagaa
tggaaacatgacatgggtctagaagaagcaccctgtgatgtggatgctgtggaaaaccac
agttcttcttttcctaaccggaaaggaaaagagattgaagtaaaagcggctccagaaaac
tgtaagatcttggactcacccgagaggggaagcaaaaggaaaaggggaagacctgctcgc
acaagcttgaacaaaggaaaatcaactgtcaaccaagctagaagagcatgggcgcgtatt
ggaaggaagccagctaaaatatctggcaacgagtcagaagagagtggctctcatgacaat
acatcacttggggaagaggttgatctgggagaaagaattcacggaacggtaggtcaggaa
agtatagacatccaagaaaatgaagcaatgaaagattctgaattgttacaaagaggcaaa
gcagttgagcaagacgtcgctgaggacattagaattgaagagccttacaaaattcctgaa
atcaaaatgatggagaaacataacgtccaagaaagtgaaaagccggaggaacttgaagct
acggctgatcctgttgaagccatgttgtttgacatgattccaagtcttggtatgaaaaaa
gctgaaactacatatacgagtactcgagatgagaaaccagcacgggatccgataccgaat
gcaggaccttcaaagaaaaagaaagttagctacaaggatattgctagtgagctgctgaag
gattggtaa
DBGET
integrated database retrieval system
