Methylomonas denitrificans: JT25_019900
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Entry
JT25_019900 CDS
T04191
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JT25_019900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_019900
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JT25_019900
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JT25_019900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
UVR
ResIII
DEAD
AAA_22
AAA_30
Kinesin
DUF87
AAA_33
HEM4
AAA
Motif
Other DBs
NCBI-ProteinID:
AMK78726
UniProt:
A0A140E5Q2
LinkDB
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Position
4335644..4337683
Genome browser
AA seq
679 aa
AA seq
DB search
MEEAKPQKKGPAHKPFKIQSRYQPAGDQPTAIAELVEGINDGELHQTLLGVTGSGKTFTV
ANVIQQTQRPAIIMAPNKTLAAQLYGEMKEFFPDNSVEYFVSYYDYYQPEAYIPASDTFI
DKDASLNEHIEQMRLSATKALLERRDTIVVATVSAIYGLGEPESYFQMVLHLVRGDMIKQ
RDILRRLAEMQYTRNDTELRRATYRVRGEVIDVFPAESEEQALRIELFDDEIERLSMFDP
LTGEVTQRLARFTLYPKSHYVTPRDQLLTAVEKIKLELAERLEQLRDNHKLVEAQRLEQR
TLFDIEMIMEVGYCSGIENYSRHLSSRADGESPPTMFDYLPNDALVIIDESHVTVPQIGA
MYKGDRSRKETLVEYGFRLPSALDNRPLKFEEFERIVGQRIYVSATPGPYEKEHSGAVVE
QVVRPTGLVDPLVEVRPATSQVDDLLSEIAKRTAVQERVLVTTLTKRMSEDLTDYLMEHG
VKVRYLHSDIETVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR
SLVSLVQTIGRAARNANGKAILYGDKITRSMQLAIDETERRRNKQIAFNKEHNIQPKTIF
KSVTDILELAIPGSGGSISNARAKVAEPAGNYKAMTPKQAAKALKQLEEKMYQHAKNLEF
EDAARVRDQIKLLQAEMVV
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaggcaaagccgcaaaaaaaaggcccggcgcataaaccgttcaagattcaaagc
cgttatcaaccggccggcgatcaacccaccgccatcgccgaattggtggaaggcattaat
gacggcgagttacatcaaaccttgctgggtgtcaccggttcgggcaagacttttaccgtc
gctaacgtgatccagcaaactcagcggccggcgataatcatggcccccaacaaaaccttg
gcggcacagttatacggtgaaatgaaggagttttttccggacaacagcgtcgagtatttt
gtgtcctattacgactactatcagcccgaggcctatattccggcctccgatacctttatc
gacaaagatgcgtcgttgaacgagcatatcgagcaaatgcgcctgtcggcgaccaaggcc
ttactggagcggcgagataccattgtggtggccacggtgtcggcgatttacggcttgggc
gagccggaatcctacttccagatggtcttgcatctggtgcgcggcgacatgatcaagcag
cgcgatattttgcggcgtttggctgagatgcagtacacccgcaacgataccgaactgcgc
cgcgccacttatcgagtgcgcggcgaagtgattgatgtgtttccggcagagtcggaagaa
caggccttgcggattgagttgttcgatgacgaaatcgagcgcttatcaatgttcgatcca
ctgaccggcgaggtgacccagcgtttggcgcgtttcacgctttacccgaaaagtcattac
gttactccgcgcgatcagttactgactgccgtggaaaaaattaaattggagttggcggag
cgtttggaacaattgcgcgacaaccacaaactggttgaagcgcagcgtctggagcaacgc
acgctgttcgacatcgaaatgatcatggaggtgggttattgctccggtatcgaaaactat
tcccggcatttatccagtcgcgcagacggcgagtcgccgccgaccatgttcgattactta
cccaacgatgccttggtgatcatcgacgaaagtcacgtcacagtgccgcagattggggcg
atgtacaaaggcgatcgctcgcgcaaagaaaccttggtggaatatggctttcgcttgccg
tcagccttggataaccgaccgcttaaatttgaagaattcgagcggattgttgggcaacgg
atttatgtctctgctacccccggcccctatgaaaaagaacactccggcgcggtggtggag
caagtcgtgcggcccaccggcttggttgatccgcttgtggaagtgcggccagccaccagc
caggttgatgatctgttgtccgagatcgccaagcgcactgctgtgcaggagcgagtgctg
gtcactaccttgaccaaacgcatgtccgaagacttgaccgattatttgatggagcatggc
gtcaaggtgcgttatctacattcggacatcgaaacggtggaacgggtggagattatccgc
gacttgcggctgggtgtgttcgatgtgctggttggcatcaacttgttgcgggagggcttg
gatataccggaggtgtcgctggtggcgatcctggatgcggataaggaagggttcctgcgc
tcgctggtgtcgctggtgcaaaccataggccgggcggcccgtaatgccaacggcaaagcc
atattgtacggcgataaaatcacgcgctcgatgcaattggctatcgacgaaaccgaacgc
cgccgcaataagcagatagcgttcaataaagaacataatatccagcctaaaaccattttc
aaatcggtgacagacatactggagctagccattcccggctccggcggttccatttccaac
gctagagcgaaagtcgccgaaccggccggcaattacaaggccatgacgcccaaacaggca
gcgaaggccttgaaacagctggaagaaaaaatgtatcagcatgccaaaaacctggagttt
gaagatgcggcgcgcgtcagggatcaaatcaagttgttgcaggcggagatggtggtttga
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