KEGG   Methylomonas denitrificans: JT25_019900
Entry
JT25_019900       CDS       T04191                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
mdn  Methylomonas denitrificans
Pathway
mdn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    JT25_019900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mdn03400]
    JT25_019900
DNA repair and recombination proteins [BR:mdn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     JT25_019900
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      JT25_019900
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C UVR ResIII DEAD AAA_22 AAA_30 Kinesin DUF87 AAA_33 HEM4 AAA
Other DBs
NCBI-ProteinID: AMK78726
UniProt: A0A140E5Q2
LinkDB
Position
4335644..4337683
AA seq 679 aa
MEEAKPQKKGPAHKPFKIQSRYQPAGDQPTAIAELVEGINDGELHQTLLGVTGSGKTFTV
ANVIQQTQRPAIIMAPNKTLAAQLYGEMKEFFPDNSVEYFVSYYDYYQPEAYIPASDTFI
DKDASLNEHIEQMRLSATKALLERRDTIVVATVSAIYGLGEPESYFQMVLHLVRGDMIKQ
RDILRRLAEMQYTRNDTELRRATYRVRGEVIDVFPAESEEQALRIELFDDEIERLSMFDP
LTGEVTQRLARFTLYPKSHYVTPRDQLLTAVEKIKLELAERLEQLRDNHKLVEAQRLEQR
TLFDIEMIMEVGYCSGIENYSRHLSSRADGESPPTMFDYLPNDALVIIDESHVTVPQIGA
MYKGDRSRKETLVEYGFRLPSALDNRPLKFEEFERIVGQRIYVSATPGPYEKEHSGAVVE
QVVRPTGLVDPLVEVRPATSQVDDLLSEIAKRTAVQERVLVTTLTKRMSEDLTDYLMEHG
VKVRYLHSDIETVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLR
SLVSLVQTIGRAARNANGKAILYGDKITRSMQLAIDETERRRNKQIAFNKEHNIQPKTIF
KSVTDILELAIPGSGGSISNARAKVAEPAGNYKAMTPKQAAKALKQLEEKMYQHAKNLEF
EDAARVRDQIKLLQAEMVV
NT seq 2040 nt   +upstreamnt  +downstreamnt
gtggaagaggcaaagccgcaaaaaaaaggcccggcgcataaaccgttcaagattcaaagc
cgttatcaaccggccggcgatcaacccaccgccatcgccgaattggtggaaggcattaat
gacggcgagttacatcaaaccttgctgggtgtcaccggttcgggcaagacttttaccgtc
gctaacgtgatccagcaaactcagcggccggcgataatcatggcccccaacaaaaccttg
gcggcacagttatacggtgaaatgaaggagttttttccggacaacagcgtcgagtatttt
gtgtcctattacgactactatcagcccgaggcctatattccggcctccgatacctttatc
gacaaagatgcgtcgttgaacgagcatatcgagcaaatgcgcctgtcggcgaccaaggcc
ttactggagcggcgagataccattgtggtggccacggtgtcggcgatttacggcttgggc
gagccggaatcctacttccagatggtcttgcatctggtgcgcggcgacatgatcaagcag
cgcgatattttgcggcgtttggctgagatgcagtacacccgcaacgataccgaactgcgc
cgcgccacttatcgagtgcgcggcgaagtgattgatgtgtttccggcagagtcggaagaa
caggccttgcggattgagttgttcgatgacgaaatcgagcgcttatcaatgttcgatcca
ctgaccggcgaggtgacccagcgtttggcgcgtttcacgctttacccgaaaagtcattac
gttactccgcgcgatcagttactgactgccgtggaaaaaattaaattggagttggcggag
cgtttggaacaattgcgcgacaaccacaaactggttgaagcgcagcgtctggagcaacgc
acgctgttcgacatcgaaatgatcatggaggtgggttattgctccggtatcgaaaactat
tcccggcatttatccagtcgcgcagacggcgagtcgccgccgaccatgttcgattactta
cccaacgatgccttggtgatcatcgacgaaagtcacgtcacagtgccgcagattggggcg
atgtacaaaggcgatcgctcgcgcaaagaaaccttggtggaatatggctttcgcttgccg
tcagccttggataaccgaccgcttaaatttgaagaattcgagcggattgttgggcaacgg
atttatgtctctgctacccccggcccctatgaaaaagaacactccggcgcggtggtggag
caagtcgtgcggcccaccggcttggttgatccgcttgtggaagtgcggccagccaccagc
caggttgatgatctgttgtccgagatcgccaagcgcactgctgtgcaggagcgagtgctg
gtcactaccttgaccaaacgcatgtccgaagacttgaccgattatttgatggagcatggc
gtcaaggtgcgttatctacattcggacatcgaaacggtggaacgggtggagattatccgc
gacttgcggctgggtgtgttcgatgtgctggttggcatcaacttgttgcgggagggcttg
gatataccggaggtgtcgctggtggcgatcctggatgcggataaggaagggttcctgcgc
tcgctggtgtcgctggtgcaaaccataggccgggcggcccgtaatgccaacggcaaagcc
atattgtacggcgataaaatcacgcgctcgatgcaattggctatcgacgaaaccgaacgc
cgccgcaataagcagatagcgttcaataaagaacataatatccagcctaaaaccattttc
aaatcggtgacagacatactggagctagccattcccggctccggcggttccatttccaac
gctagagcgaaagtcgccgaaccggccggcaattacaaggccatgacgcccaaacaggca
gcgaaggccttgaaacagctggaagaaaaaatgtatcagcatgccaaaaacctggagttt
gaagatgcggcgcgcgtcagggatcaaatcaagttgttgcaggcggagatggtggtttga

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