Monodelphis domestica (gray short-tailed opossum): 100013834
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Entry
100013834 CDS
T01031
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specific factor 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03015
mRNA surveillance pathway
mdo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100013834 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100013834 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100013834 (CPSF6)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
100013834 (CPSF6)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
100013834
NCBI-ProteinID:
NP_001165832
Ensembl:
ENSMODG00000007123
UniProt:
F6SH96
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Position
8:complement(26529468..26568378)
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AA seq
551 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDALPPSV
GDDVGKGSAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDAARTPLSEAEFEEIMNR
NRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGI
ESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDR
ERDREREYRHR
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcatatagacatttacgcggatgtgggcgaggagttcaaccag
gaagctgaatacggtgggcatgatcagatagatttgtatgatgatgtcatctctccatct
gcaaataatggagatgccccagaagaccgggattacatggatgctctcccaccttctgtt
ggcgatgatgtaggtaaaggatcagcaccaaatgttgtctatacctatactggaaagaga
attgcattgtacattggaaatcttacatggtggacaactgatgaagatttaactgaagca
gtccattctttgggggtaaatgatattttggagataaagttttttgaaaaccgtgctaat
ggccaatcaaaggggtttgcccttgttggggttggatctgaagcatcctcaaaaaagtta
atggatctgttgcctaaaagggaactacatggtcagaatcctgttgtgactccgtgtaat
aagcagttcctgagtcaatttgaaatgcagtccaggaaaactacacagtcaggacaaatg
tctggggaaggtaaagctggccctccaggaggcagttcacgtgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttccaggtggggacagatttcctggacca
gctggaccaggagggccacccccacctttcccagctggacaaactccaccacgtccaccc
ctaggtcctccaggccctcccggcccaccaggccctccacctcctggtcaggttcttcct
cctccattagctgggcctcctaatcgaggtgatcgccctccaccaccagttctttttcca
ggacagccttttgggcagcctccattgggtccgcttcctcctggtcctccacctccagtg
ccaggctacggcccccctcctggtcctccacctccacagcagggaccgcctccacctcca
ggcccttttccacctcgcccacctggccctcttgggccaccccttacacttgctcctcct
ccacatcttcctggaccacctccaggtgcccccccaccagctccacacgtgaacccagct
ttctttcccccaccaaccaacagtggcatgccaacatcagacagtcggggtccaccaccc
acagacccatatggccgacctcccccgtatgatagaggtgactatgggccccctggaaga
gaaatggatgctgcaagaacaccattaagtgaagcagagtttgaagaaatcatgaataga
aacagagcaatttcaagcagcgccatttcaagagctgtgtctgacgccagtgctggtgat
tatgggagtgctattgagacattggtaactgctatttccttaattaaacaatccaaagta
tctgctgatgatcgttgcaaagtgcttattagttctttgcaggattgccttcatggaatt
gagtccaaatcttatggttctggatcaagacgtgaacgctcaagagagagggaccacagt
agatccagagaaaagagcagacgtcacaaatctcgtagtagagatcgtcatgatgattat
tatagagagagaagcagagaacgagaaagacatcgggatcgtgaccgagaccgtgataga
gaacgtgacagagagcgagaatatcgtcaccgttaa
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