Monodelphis domestica (gray short-tailed opossum): 100015147
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Entry
100015147 CDS
T01031
Symbol
FOCAD
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100015147 (FOCAD)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100015147 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
100015147
NCBI-ProteinID:
XP_001364590
Ensembl:
ENSMODG00000003634
UniProt:
F7BM63
LinkDB
All DBs
Position
6:34965898..35344053
Genome browser
AA seq
1804 aa
AA seq
DB search
MSEDLRKRFEFPNSLIQSQAVGHLIAAVLKENSLSEKINQSTNQTPALNLLWEKCCSDNV
VVRTACCEGLVALVVQNHAEFSYILNGILNLIPSTRNTHGLIKAVVKLLQMQALKEGKDG
ENAVKDLYGIRNHHHPLITVLENRSDCWPVLLQQLTAFFQQCPERSEILCISIMAPFLRY
LYCEPSQLQEYSKLRMGLLKVLLQPKGPGDKEKPSLMEKHVLQLFCDLVPYLQVKDLVQT
TEVTLFLQELYLNLLRHPVFWEKELIQLSLQILCVCEVSLKITGECSSLIHLLEQNFELL
KEGFPVEQAIIGLSLLILQTPTSQHKPILNLALKLLSSPGTKNIPTSSLLLVMPLLQILS
STALEDCISAEDGSPSRQELALTLLEMVQQEGSREQNQLTSYKLAFPVTSMYYPMFTTWR
ILEQMKEESTVCDWLSSVKSLLPIATHVPVHVFLLLAHLLVQEKGESLRNVLRTTTEIAK
ADSSQVPNLVPVLMFKLGRPLEPILYNDILYTLPSLGVHKVCVAQILRVIQVLGNTPQLR
AVTLRLMTSLWEKQDRVYPELQRFMALSDVPSLSVGKETQWEKLIAKAASIRDICRQRPY
QHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWSALSPKLSCDTR
PLILKTLSELFALVPSLTVNTSEYENFKVQVLSFLWSHSQSKDPTVATAAYKSLSAFGSE
EHTILHLPEEVRPEIDLPEELDGNEEEEEKEPDLSVPGSSYIKLLSVTSPSVLSALEEFF
VSLVKQEMVNMPRGIYHSALRGGASRSDQGKTIAGIPNFMLKMYEKNKQPGLKSGLAAGM
LLCYDLPIHMGKDGKPINRFLASRGRSFQQILVALIHEVNIQPSEWHRSILLPQSWLGFM
NRTYHAVLQGRQAELDMQLKHGKDAPEEIQYKKFTAWLWVRDMLTDQIIKSASKESPVVK
GNSLLALTSLAVVVSKHENSLSSETDGAPEIEPDFLPMKQWISMVVNTLLVIVDSHHQPK
GQVFSWFYHKSYSGENTASAIARSCAAMALSLLVPVFILSCKEKVEEVLSMLTARLPGKP
SADESQAVQIHMGLALGMFISRLCEEKVSDVSGQQLNLLLMTSLDALENCCFDTSIEYNT
GCILGVGLVLSLMSHSSQTESRVHIATSLRKLSTYLDESGDQSRTFQEVLAYSLSCVCTS
AFGAGIIEAMEAEDIMNKLRTLVENNQQNSGFALALGNIVHGLSVCGHGKAEDLSNRLLP
AWIKIVLTEGSPTMQCLAAVNGLVALVGSEGAIMQLKSETIQASHFQSQLNEVIRTITQV
ISFSGVIGLQTNAAWLLGHLHLSSLSSSQSRTSVPADFSYLPENSFIRAAVDFIIEGGKK
GPESVPPSLVKVAMKPIATVGENYQYPPVNWASLLSPLMRLNFGEEVQQLSIEIMVTQAQ
SSQNAAMLLGMWVVPPLIHSLNLKTKKYLLASLPLWMKHVSEDQLQVFTEVFMVQLFEAS
LAVQDPELCQSALQGLSQAMKLPSPAQYLWSQLCWATEKIFDLLPNKIRRSDVDLYINAA
KCLSEMTDAEIDRITHITKNNIKKAAFVKVYLVSQGRFPLMHWNDVIEVAVRCQDRETVA
WMMLHGLYHARIISHANTGVLKRMEWLLELMGYIRNVAYKSTSVENVALEEAINFLLLLF
AASVVAWGDHDAPLLLGLSASWLPWHHEGGVAGSSPGYLGQSPNNKVTLQETLTLLPSSM
LLLLSKEPWKEQTQKFIDWLFSIMESPQEALSSSSRDLLKATTLALRFLPEFKKKVVWSR
AYGW
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaggatttaaggaaaagattcgagtttcccaattcccttatccagtcacaggct
gtaggtcaccttattgctgcagtattgaaagaaaatagtttgtcagaaaagatcaaccaa
tctacaaaccagactcctgctttgaatctcttgtgggagaagtgttgcagtgacaatgtt
gtggttcgaactgcctgctgtgagggtctggtggcacttgttgtacagaatcatgctgag
ttcagctacattcttaatggaatactcaaccttatcccctcaaccagaaatacacatggc
ctaataaaagctgttgtgaagttattacaaatgcaagcactgaaagaaggaaaggatgga
gagaatgctgtgaaagatttgtatggcatccgaaaccatcatcatcctctcatcactgtg
cttgaaaacaggtcagattgctggccagttcttctacaacagcttacagctttttttcag
cagtgcccagaaagatcagaaattttatgcatctctataatggccccatttctccgttac
ctttattgtgaaccatcccagttacaggagtattccaaattgaggatgggtttgcttaaa
gtgttgctccaacccaagggacctggtgataaagaaaaaccctccttaatggaaaaacat
gttcttcagttgttttgtgacttggttccatatttacaggtgaaagatttggtacaaaca
acagaagtgacactgtttcttcaagaattatatttgaatcttttacgtcatcctgttttc
tgggaaaaggagctcatccagctaagcctgcaaattctgtgtgtttgtgaagttagccta
aagataactggagagtgttcatctttaattcaccttttagagcaaaattttgaacttctg
aaagagggatttccagttgaacaagcaataattggattaagtttactcatcctacagaca
cccacaagtcagcacaaaccaatcctaaatctagctttgaaactcctctcctctccgggg
accaagaacatcccaacctcatccctgctgctggtgatgccactgctgcagattttgtca
tccacagccttggaggattgtatttcagcagaagatggcagcccttctagacaagagctg
gctctaaccctcttggaaatggttcaacaggagggctccagagaacaaaaccagttgacg
tcctataagcttgctttccctgtaaccagcatgtattatccgatgtttacaacctggaga
atccttgaacaaatgaaagaagagtccacagtatgtgattggctgtcttctgtgaaatca
ttgctgcctattgccacccatgttcctgtacatgttttccttctgttggcccacttgctc
gttcaagaaaaaggagagagtcttcgcaatgtacttaggaccaccactgaaatagccaaa
gctgactcctctcaggtaccaaatcttgtccctgtgttgatgttcaaacttggaagacca
ctggaacctattttgtataatgacattttgtatactctcccttctttgggagtccataag
gtttgtgttgcacaaatactgcgcgtgatccaggttctgggaaatactccacaacttaga
gctgtcactttacgcttaatgacatctttgtgggagaaacaggatcgtgtgtacccagaa
ctgcagcggttcatggcattgtctgacgtcccatctttatctgtgggcaaagagacacag
tgggagaagctgattgccaaagcagcctccatcagggacatctgcagacagagaccatac
cagcatggggcagatatgttggcagctatttcacaggtgttgaatgaatgtaccaagcct
gatcaggctactccagcagccttagtattacaaggtcttcacgcgctctgccaagctgag
gttgtttgcattcgttccacatggagtgccctctctccaaagctgagttgtgacacacgg
cctcttatattaaagacattaagtgagctatttgctctagttccatcactgacagtgaac
acttctgaatatgagaattttaaagttcaagttctcagcttcctctggagtcactctcaa
agcaaggatcctactgtggcaactgctgcgtacaaatccttgtcagcatttggttccgaa
gagcacaccattcttcatctccctgaagaggtaaggccagaaattgatctcccagaagag
ctggatggaaatgaagaagaagaggagaaggagccagacctttctgtccctggttcttct
tacatcaaactactttcagtcaccagtccttcagtcctttcagcacttgaagagtttttt
gtatcacttgtgaagcaagagatggtgaatatgcctcgtggtatctaccattctgcatta
agaggaggtgcatctcgttctgaccaagggaagacaatagcaggaattcccaatttcatg
ttgaaaatgtatgagaaaaataaacaaccaggcctgaaatctggccttgcagctggtatg
ttgctttgctacgatcttccaatccacatgggtaaagatggcaaacccatcaatcgattc
ttggccagtagagggaggagcttccagcagatcttagtggctcttattcatgaggtgaat
atccagccatctgaatggcaccgatcaatccttcttccacagtcctggctgggatttatg
aataggacataccatgcagtcttacagggaagacaggcagagctggatatgcagttaaaa
catggaaaagatgctcccgaggagatacaatacaagaaatttacagcttggctctgggtt
agagacatgctgactgaccagatcatcaagtcagcctcgaaggaaagcccagtggtcaaa
gggaattcactcctggcattaaccagtcttgctgttgttgtatctaaacatgaaaacagc
ctttcctcagaaactgatggggcaccagagattgaacctgatttccttcccatgaaacag
tggatttctatggtggtcaataccctcttagtaattgtggacagccatcaccagcccaag
ggacaagtcttctcctggttctatcacaaatcatactctggtgaaaacacagctagtgcc
attgctcgttcctgtgctgccatggccttatccctcctggttccagttttcattttgtct
tgcaaggagaaggtggaagaagttttgagtatgttgactgctagattacctgggaaacca
agtgcagatgagtctcaagccgttcaaatccacatgggccttgctttggggatgtttatc
tctcgtttgtgtgaggagaaagtcagtgatgtatctggccaacagttgaaccttcttctg
atgacatctttggatgctttggaaaactgctgctttgacaccagtatcgaatacaacact
ggttgcatcctcggagtaggacttgtcctgtcactcatgagccacagcagtcaaactgag
tcccgtgtacacattgctacatctcttcgaaagctctcgacgtacctggatgagagtggg
gaccaaagcagaacattccaagaggtccttgcttactctctcagttgtgtatgcacttcg
gctttcggcgctggaattattgaggccatggaggctgaagatattatgaataaacttcgg
acattagttgaaaataaccagcagaattcaggctttgcgttggcattagggaacatcgtt
catggtttgtcagtctgtggacatggaaaagcagaagacttgagcaacagactacttcca
gcgtggataaaaattgttcttacagagggctctcccacaatgcaatgcctagcagctgtt
aatggtctggttgccttggttggttctgaaggtgcaatcatgcagctgaaatcagaaaca
attcaagcttctcactttcaaagtcaacttaatgaagtaatcagaaccataactcaggtc
atcagtttctctggagtgattggactgcagacaaatgcagcttggcttcttggacatctt
catctatccagcttgtcttcgagtcagagcagaacatctgttcctgctgactttagctat
ttgcctgagaacagctttattagggcagctgttgactttatcattgaaggagggaagaaa
ggtcctgaatctgttcctccttccctggtgaaagtagccatgaaacccatagcaactgtt
ggagaaaattaccagtatcctcctgtgaattgggcttccctgctttcccctcttatgaga
ctgaactttggtgaagaagttcagcagttatccattgaaattatggtaacccaggcacaa
tcatctcaaaatgccgctatgctgttgggaatgtgggtggtaccaccgctaatccacagt
ctgaatctgaaaacaaaaaagtaccttttggcgtctctaccactgtggatgaaacatgta
tctgaagaccagctccaggttttcactgaagtgtttatggtgcagctttttgaagcttct
cttgctgtccaggatcctgagttatgtcagagtgccttacagggacttagccaggctatg
aaactgcccagtccagctcagtacctctggagtcaactctgctgggctactgagaaaatc
tttgatcttttgccaaacaagattcggagaagtgatgtcgacctgtatatcaatgcagca
aaatgcctttcagaaatgacagatgctgagattgatcgtattacccatattactaagaac
aacataaagaaggctgcctttgtgaaagtatatttagtctctcaaggtcgatttcctctg
atgcactggaatgatgttattgaggttgcagttcgatgtcaagacagagaaacagttgct
tggatgatgttacatggtttatatcatgcccgaattataagccatgcaaacacaggagtg
ctgaagagaatggaatggctgttggaactgatgggttacattagaaatgttgcttacaag
tcaacatctgttgagaatgtggctcttgaagaggctatcaactttctgttgctgcttttt
gcagcttctgtggttgcatggggtgaccacgatgcccctctcctgcttggactcagtgcc
agctggttgccatggcaccacgaaggaggcgtagctgggtcctctcctggttatcttggc
cagagtccaaacaacaaggtcaccttgcaggagactctcaccctccttcccagcagcatg
ctgcttctgctaagcaaagaaccatggaaggagcaaacacaaaagttcatagattggcta
ttcagtattatggaaagtcctcaagaagcactctcatcaagttccagagatcttttaaaa
gctacaactctggcgttgaggtttcttcctgaatttaagaagaaagtagtatggtccagg
gcatatggttggtaa
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integrated database retrieval system
