Monodelphis domestica (gray short-tailed opossum): 100018340
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Entry
100018340 CDS
T01031
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03082
ATP-dependent chromatin remodeling
mdo04714
Thermogenesis
mdo05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100018340 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100018340 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100018340 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdo03021
]
100018340 (SMARCC1)
03036 Chromosome and associated proteins [BR:
mdo03036
]
100018340 (SMARCC1)
Transcription machinery [BR:
mdo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100018340 (SMARCC1)
Chromosome and associated proteins [BR:
mdo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100018340 (SMARCC1)
PBAF complex
100018340 (SMARCC1)
GBAF(ncBAF) complex
100018340 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
100018340
NCBI-ProteinID:
XP_001366921
Ensembl:
ENSMODG00000014207
UniProt:
F6TQC1
LinkDB
All DBs
Position
6:195860842..196015847
Genome browser
AA seq
1107 aa
AA seq
DB search
MAAAAGGGGGGAPGAAAGGAGPGGTAATAVGLALCRRKDGGPAGKFWESPETVSQLDSVR
VWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGG
TLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPNIYLIPDI
ELKLANKLKDIVKRHQGTFTDEKSKASHHIYPNPTSPEDEEWLRPVMKKDKQVLVHWGFY
PDSYDTWVHASDIDAEIEDPPIPEKPWKVNAKWILDTDIFNEWMNEEDYEVDENKKPVSF
RQRISTKNEEPVRSPERRDRKAAASTRKRKHSPSPPPPTPVESRKKTGKKGQASLYGKRR
GQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETV
TTGGKEDEDPSKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFN
GKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVN
YQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRTPQVPAAQQMLNFPEKNKEKPTDL
QNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDE
CILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAK
AALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLDGT
EEEKMETDTDGQQTEKVENKGENETDECDKTQDGENEKSIEKEQDSEINEDTKSEEKDAE
ENKENDPCKERENDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVA
LLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQ
MEQQQHGQNTQQSHQHSGGPGMNPIGAPGHPGMLTHQQPPPYPMMHHQMPPPHPPQPGQM
PGPGSMMPGQPMPGRMIPAVAANIHPSGGGPPQPVMPPMPGNIIGPRVPLAAPNGMYPPP
PQQQPPPPPPTDGVTPPPAAAPASSAP
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcggcgggggcggcggcgccccaggggcggcggcgggcggcgcg
ggaccgggaggcacggcggcgacggccgtgggtctggccctgtgtcggcggaaggacggg
ggcccagcgggcaagttttgggagagcccggagacggtttcccagctggactcggtgcgg
gtctggctgggcaagcactataagaagtatgttcaagcagatgcacctaccaataaaact
ttggccggactggtagtacagctactacagtttcaagaagatgcctttgggaaacatgtc
accaatcctgccttcaccaaacttcctgcaaagtgcttcatggatttcaaagctggaggt
accttgtgtcacattcttggggctgcatacaagtataaaaatgaacaaggatggagaagg
tttgacctgcagaatccttcccgaatggatcgaaatgtggagatgtttatgaatattgaa
aaaacactagtgcagaacaactgtttgagcagacctaacatctacctcattccagacatt
gaactgaagttggctaacaaactaaaggacattgtcaaaagacatcagggaacattcact
gatgaaaaatcaaaagcctctcatcacatttatcctaatcctacctcaccagaggatgaa
gaatggttgagacctgtgatgaaaaaagacaagcaagtgctagtgcactggggattttac
ccagacagctatgatacttgggtccatgctagtgatattgatgctgaaattgaggatcct
cccattccagaaaaaccatggaaagtgaatgcaaaatggattttagacactgatattttc
aatgaatggatgaatgaagaagattatgaggttgatgagaacaagaaaccagttagtttt
cgtcagcgcatctcaacaaagaatgaagagccagtccgtagtcctgagagaagagatagg
aaagcggctgcaagtacaagaaagagaaaacattcaccttctcctcctcctcctactcct
gttgaatcaaggaaaaagactggaaagaaaggacaagctagtctttatgggaagaggaga
ggtcagaaagaagaggatgaacaagaagatctcactaaggatatggaagatccaacgcct
gtacctaatatagaggaagtggtacttcctaaaaatgttaacccaaagaaagacagtgaa
aatacaccagttaaaggaggaactgttgcagatctagatgagcaggatgaagaaacagtg
acaacaggaggaaaggaggatgaggatcctagcaaaggtgatcagagtcgatcaattgat
cctggtgaagacaatgtaaccgagcagacaaatcacattatcattcccagttatgcatcg
tggtttgattataattgtattcatgtgatagaacgtcgtgctcttcccgagtttttcaat
ggaaaaaacaagtctaaaactccagaaatatacttggcataccgtaacttcatgattgac
acataccgcttaaacccccaagagtatttaaccagcactgcttgcagacggaatttgaca
ggagatgtctgtgctgttatgagggttcatgcttttttggaacagtgggggcttgttaat
taccaggttgatccagaaagtcgaccaatggcaatgggacctcctccaactcctcacttc
aatgtgctggctgataccccctccgggctagtgcctctccatctcagaacacctcaggtc
cctgctgctcagcagatgttgaattttcctgagaaaaataaggagaaacctactgactta
cagaacttcggccttcgcacagatatttattccaagaaaaccttagcaaaaagtaaagga
gccagtgctggaagagaatggactgaacaggagacgctgctacttttagaggcccttgag
atgtacaaagacgattggaataaagtatcagaacacgttggcagtcgaactcaggatgag
tgtatcctccactttctgagacttcctattgaggatccttatcttgagaactcagatgct
tcccttggaccactagcttaccaacctgtccctttcagtcaatcaggaaaccctgttatg
agcacagttgcattcttagcatctgtggtggatccacgggtggcttctgcagccgctaaa
gctgctttagaggagttttcccgtgtccgggaagaagtgccattggaattagttgaagct
catgtcaagaaagtgcaggaagcagcaagagcctctggaaaagtagatccaacatatggt
ctagaaagtagctgtattgctgggactggtcctgatgaaccagagaaacttgatggtact
gaagaagaaaaaatggaaacagacacagatggacaacagactgaaaaggttgaaaacaaa
ggagaaaatgaaactgacgaatgtgacaaaacacaagatggagaaaatgagaaaagtatt
gagaaagaacaagatagtgaaattaatgaagataccaaatcagaagaaaaggatgctgag
gagaataaggaaaatgatccctgtaaagagagggagaatgatacgggaaagaagaaagtg
gaacatgagatttctgaaggaaatgtagccacagctgcagcagctgctcttgcctcagct
gccaccaaagcaaagcatcttgctgcagtagaagaaagaaagatcaagtctctagtagcc
ctgttggtggagactcaaatgaagaagctagagataaaactccgtcattttgaggaactg
gaaaccatcatggacagggagaaggaggctttagaacagcaaagacagcagttactcact
gaacgccagaacttccacatggagcagctaaaatatgctgaattaagggctcgccagcaa
atggaacaacagcagcatgggcagaacactcagcagtcacaccagcattctggagggcct
ggtatgaacccaattggagcaccagggcatccaggaatgttgactcatcagcaaccccct
ccttatcccatgatgcaccatcagatgccccctcctcatccacctcaaccaggtcagatg
ccaggtcctggttccatgatgcctggacagcccatgccaggccgtatgattccagctgtt
gcagccaatatccatccttctgggggtggtcctccccaacctgtcatgcctccaatgcct
gggaacatcattggaccacgtgtaccccttgcagcacccaatggcatgtatccccctcct
ccgcagcagcagcccccaccgcctccacccaccgatggcgtcactcctcctcctgcagca
gcaccagcctcctcagctccctaa
DBGET
integrated database retrieval system
