Monodelphis domestica (gray short-tailed opossum): 100026507
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Entry
100026507 CDS
T01031
Symbol
PCF11
Name
(RefSeq) PCF11 cleavage and polyadenylation factor subunit
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100026507 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdo03021
]
100026507 (PCF11)
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100026507 (PCF11)
Transcription machinery [BR:
mdo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100026507 (PCF11)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100026507 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
100026507
NCBI-ProteinID:
XP_007490944
Ensembl:
ENSMODG00000004498
UniProt:
F6VAA0
LinkDB
All DBs
Position
4:complement(328702024..328734954)
Genome browser
AA seq
1695 aa
AA seq
DB search
MSEPAPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPPTPSTVV
SSPGISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSV
QQGATNIVPGSAPSKLLVSQIPPMAVKASHQVSVQPEKSRPSSSSSSQLQDMKVTNRDPR
LNRISQHSSHGKEQSHRKDFLVNTMNQSDIKANKSIPTDKQNSSKQEKSKSSEKITKKEL
DQLDTKSKSKSPSPLKNKFSHTKDVKNQESESRGVPEMSKRDPRLKKHLQDKPDGKDDDS
KEKRKSSEKKDKEEHMKSSEHRLTGGRNKIINGIVQKQEAGADESEKQGTKTGRSSTRKR
SRSRSPKSRSPITHSPKRRDRRSPKRRQRSISPSTSTPKTGKLRQSGIKQSHVEEFTQAS
RDERNSNKRSAKQDTRDPRRVKKTQEERPQETVNQHSTKSGSEPKENVENWQSSKSTKRW
KSGWEENKSLQQGEEHQGLSKSPHLRHRESWASAKGILSSRAPKQQHRLSVDANLQIPKE
LTSASKRELLKKANDSLTSGEITQDEFLVVVHQIRQLFQYQEGKHRCSVWDSPTEENKGG
LKKKPLLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYHLTDALLSGIECEPSKS
KHTGRSSGAQFDRKEQFSERSRRLSPISGSRTYAENLSSHDGRRRHEEQVSAKGVREEQR
SPFGERFALKRPRYEDSDKTFADSPASRYSSLDTTNQRLTALAEDRPLFDGPSRPSVARG
DGPTKMIFEGPNKPNPRIDGPPTPASLRFEGSPGQIGGGGPMRFEGPQGQLGGGCPLRFE
GPQGPAGTPLRFEGPLGQAGGGGLRFEGTAGLRFEGPTGGLRFEGPAGQSVGGLRYEGPR
GQPVGGLRFEGPHGQPVGALRFENPRGQPVGGLRFEGSHGASGSGIRFEGPHGQPGGGIR
FEGPLLQQGGGMRFEGPHGQSVAGLRFEGQHNQLGGSLRFEGPHGQPGVGVRFEGPLVQQ
GSGMRFEGPSVQGGNMRFEGPLGQGGPRFEGCHASRFDGQPGQPSLLPRFDGLHGQPGPR
FERTPGQQGPQRFDGPPGQQVQPRFDTGPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQ
RLDAVSFSQTGPYNDPPNNAFNAPSQGIQFQRHEQMFDTPQGPNFNGPHGPGAQGFSNPL
NRASGHYFDEKNLQGPQFGNFGNLPTPIAVGNIQPSQQVLSGVTQPVAFGQGQQFLPVHP
QNPGTFVQNPAGTLPRAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVTTQP
PPEEEEEDQSEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYAD
HLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKT
QEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYE
DYQNTSSFDCTPSPSKTPVENPLNIMLNIVKKELQEPCESSKVKEEPVDVPPACTDESVA
ISTEIKTEPDTVESV
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagccggcgccggccgaggccggtaccgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtccctggaagacctgaccttcaacagtaaaccgcacatcaatatgctg
accattctggctgaggagaacctgcctttcgccaaggagatcgtctccctcatcgaggcc
caaaccgccaaggctccttctacagagaagctccctgttatgtatcttatggattccatt
gtgaagaacgttggaagagagtatcttactgcctttactaaaaacctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctcc
acatgggatgacattttccctttgaagaaactttatgccttggatgtcagagttaattca
ttagatcctgcttggccaattaagcctctaccccccaatgtgaatacttctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagaacctcctacacctagcacagtggtc
agttcccctggaatctccactcctccaattgtccctgatatccaaaagaatttgacccaa
gagcaactgataaggcaacagctgctggcaaagcaaaaacagttgttagaacttcagcag
aaaaaattggagctggagctggaacaaactaaggcacaactggcagtttctcttagtgtt
cagcaaggggcaactaacatagttcctggatcagcaccttccaaattacttgtttcgcaa
attccacctatggcagttaaagcttctcatcaggtttctgtacagcctgaaaagagtcgc
ccctcttcatcctcatcctcacagctacaggatatgaaagtgacaaacagagatccccgt
cttaatcggataagccaacattcttctcatggtaaagaacaaagtcacaggaaagacttt
ctagtgaatacaatgaatcaatctgatatcaaggcaaataaatctatacctactgataaa
cagaactcatcaaagcaagaaaaaagtaaatcaagtgaaaaaatcacaaagaaagaacta
gaccagttagatactaagtccaaatctaaatctccttcacctttgaaaaacaaattttct
catacaaaagatgtaaaaaatcaggaatctgaaagtcgaggggtccctgaaatgagcaaa
agagatccacgattaaaaaaacacctccaggataagcctgatggcaaagatgatgactca
aaagagaagagaaagtcttcagaaaaaaaagataaagaagagcatatgaagtcatctgaa
catagactcactggaggtagaaataaaattataaatggcatagtacaaaaacaagaagct
ggtgctgacgaatcagaaaaacaagggacaaaaacaggaagatcaagtactagaaaacga
tcacgatcacgatctcccaagtctcgatcaccaattacgcattctccaaaaaggagagat
aggcgctcacctaaacgaaggcaaagaagcatttctccttctacttctacacctaaaact
ggaaagctacgtcaatcaggaattaagcagtcacatgtagaagaatttacacaggcttct
cgtgatgaaagaaattctaataagagaagtgctaagcaggacacccgagatcctaggcga
gtaaaaaagactcaagaagagagaccacaagaaactgtaaatcagcattctacaaaatca
gggtcggaaccaaaggagaatgtagaaaattggcaaagttctaagtctacaaaaagatgg
aaatctggttgggaggaaaataaaagcttacaacagggtgaagagcatcaaggacttagt
aaatcacctcatttaagacatagagagagctgggccagtgctaaaggaattttatcatcc
cgagcccctaaacaacaacatcgattaagtgtagatgccaatcttcagattcctaaagaa
ttaacttctgcaagcaaaagagaactacttaaaaaggcaaatgatagtttaacatctggt
gaaattacacaggatgaatttcttgttgttgttcatcagattcgtcagctctttcaatat
caagaaggaaaacatagatgcagtgtatgggatagtcctacagaagaaaataaaggtgga
ttaaaaaagaaacctctcttatctgatgctgaattaacctattatgagcataaagctaag
ctcaaaaggacacaagttcagcattcatttccaagacttgatctcttggatcccgatatt
tttgattaccatttgactgatgctttgttgtcaggaatagaatgtgaaccatccaaaagt
aaacatacaggtaggagtagtggagcacaatttgatagaaaagagcaatttagtgaaaga
tcaaggcgtctttctccaatatctggaagccgtacttatgctgagaatctttcctcccat
gatggtcgaagaagacatgaagagcaagtctctgctaaaggtgtccgagaagagcaaagg
tctccatttggtgagcgttttgcacttaagagacctagatatgaagattcagataaaaca
tttgcagacagcccagcatcgagatattcaagcctcgatacaacaaatcagagacttaca
gcattagctgaagacagaccattatttgatggaccttctaggccatctgtagcaagggga
gatggcccaactaaaatgatttttgaaggacctaataagccaaatcctagaattgatgga
cctccaacaccagcttctcttcggtttgaagggtcaccaggacaaatagggggaggggga
cctatgaggtttgaaggaccacaaggtcagctaggaggtgggtgtcctttgagatttgaa
ggtcctcaaggaccagcagggactcctttgagatttgaagggccacttggacaggcagga
ggaggtggcttaaggtttgaaggaactgctggtttgcggtttgagggtcctacaggtggt
ttgaggtttgagggcccagctggccagtctgtgggtggtcttagatatgagggtcctcgt
ggtcagcctgtgggtggtcttaggtttgagggacctcatggtcagcctgttggtgctcta
aggtttgagaatcctcgaggtcagcctgttggtggactccgatttgagggaagtcatggt
gcctcaggaagtggaattagatttgagggaccccatggtcagccagggggtggaatcaga
tttgagggccccttgctccagcagggtggtggtatgagatttgagggtccccatggccag
tcagtggcaggtcttagatttgaaggccaacataatcagcttggtggaagccttcgtttt
gaaggaccacatggtcagccaggggttggggtcagatttgaaggacccttagttcaacaa
ggaagtggaatgagatttgaaggtccttctgtacaaggaggtaatatgagatttgaagga
cctcttggtcaaggtggaccaagatttgagggatgtcatgcttcaagatttgatggtcaa
ccaggtcagccatctcttttgccaagatttgatggtttgcatggtcagcctggtcctaga
tttgaaagaactcctggtcaacaaggcccacaaagatttgatgggccacctggtcagcag
gtccaacctagatttgatacagggcctcaaagatttgatggtccacaacaccagcaagca
tcgaggtttgatattcctcttggtcttcaaggtgcaaggtttgacaatcatccttcacag
agacttgatgcagtctcttttagtcagactggtccatataatgaccctcccaacaatgca
tttaatgcaccgtcacaaggaatacagttccaaagacatgagcaaatgtttgatacacct
cagggaccaaattttaatggaccacatggccctggagcacaaggtttctcaaatccactt
aacagagcatctggacattattttgatgaaaagaatcttcagggtccacagtttggaaac
tttggtaatctgcccacaccaattgcagtaggaaatattcagccatctcaacaggttctc
tctggtgttactcagcctgtagcttttggacaaggacaacagtttttaccagttcatcca
caaaatcctggtacttttgttcagaatccagcaggtactcttccacgagcatatcctgat
aatcatctcagccaggttgatgtcaatgaactgttttctaaactgctaaaaacaggaata
cttaaattatctcaacctgattcagcaacaactcaagtaaatgaagttactacacagcct
ccccctgaggaagaagaagaagatcaaagtgaagatcaagatgttcctgacctcactaat
ttcacagttgaagaactgaaacagcgttatgatagtgttataaatcgactatatactggt
atccagtgttattcttgtggaatgaggtttacaacatcacagactgatgtctatgcagac
catttggactggcattatcgacaaaatagaactgaaaaggatgttagcagaaaagttact
cataggaggtggtactacagtttaactgactggatagaatttgaggaaatagctgatttg
gaggaacgtgcaaagagccaattctttgaaaaggtacatgaagaggttgtgttgaaaacc
caagaagctgctaaagaaaaggagtttcagagtgtccctgctggaccagctggggcagta
gagagctgtgaaatatgtcaggagcaatttgaacaatactgggatgaagaggaggaagaa
tggcatctaaaaaatgctatccgagtagatggaaagatttaccatccatcatgttatgaa
gattatcaaaatacgtcttcatttgattgtacaccatctcccagcaagacacctgttgaa
aatcccttgaatattatgttgaacattgtcaaaaaagaactgcaggaaccctgtgaaagt
tccaaagttaaagaagaaccagttgatgtcccaccagcctgtacagatgaaagcgtagct
atatctactgaaattaaaacagaacctgatacagttgagtcagtttaa
DBGET
integrated database retrieval system
