Monodelphis domestica (gray short-tailed opossum): 100618617
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Entry
100618617 CDS
T01031
Symbol
USH1C
Name
(RefSeq) USH1 protein network component harmonin
KO
K21877
harmonin
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
mdo03037
]
100618617 (USH1C)
Cilium and associated proteins [BR:
mdo03037
]
Primary cilia and associated proteins
USH complex and associated proteins
100618617 (USH1C)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
USH1C_N
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
100618617
NCBI-ProteinID:
XP_016278893
Ensembl:
ENSMODG00000006841
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All DBs
Position
5:243919953..243984657
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AA seq
881 aa
AA seq
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MDRKVAREFRHKVDFLIENDAEKDYLYDVLRMYHEAMDVSVLVGDLKLVINEPNRLPLFD
AVRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRTHPEGLGISVRGGLEFGCGLFISHLIKG
GQADNVGLQLGDEIVRINGYSISSCTHEEIINLIRTKKTVSIKVRHIGMIPVKNSPDESL
KWQFVDQFVAETGAGRGVLPFLGSRENREKKVFISLIGSRGLGCSISSGPTQKPGIFISN
VKPGSLSAEVGLETGDQIVEVNGIDFTHMDHKEAVNVLKSSRSLTISIVAGAGRELFMTE
RERQAEIRQRELDRQELMLQKRLAMESNKILQEQQEKERQRKKEIAQKAAEENERYRKEI
EQITEDEERFKKQWEEEWGTKGQLLMPKTITAEVHPPPPRKPKSFGWFYRYEGKFPTIRK
KGKDKKKSKHDSLQELRKHKKEIEFEQKLYKEKEEMLEKEKQLKINRLAQEVSETEREDL
EESEKIQYWVERLCQTRLEQISSAENELSEMTTSPPSSVTLLAPPLRRFGGLHLHTTDLD
DIPLDMFYYPPKRPAPLPPPSALPVMPHPPTPNLPTKVSAPPIIVPAGQGSSSSTWVRRP
PPPLPPPPSVPTLDLNLSRSLPSALEEALVNHGLHSGDATEPVEDWELKNYTGRPASSPL
PERSFPPTPKPLCPSPMPPRGPGVSTISKPVMIPYDFNFVGRPVVRSEVLPQEMLKRMVV
YQSPFRKDFRKYEEDFNPYSMFLREQIIGKDVRLLRIKKEGSLDLAVEGGVDSPIGKIVV
SAVYEDGAADRHGGIVKGDEIMAINGKIVTGFTLAEAQATLQNAWHHGADWIDLVIAVSP
PKEYDDELSSLPSSADSSPQPLRKSLEGSAPVHRHGFLLQL
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggacaggaaggtggctcgggaattccggcacaaggtggatttcctgattgaaaatgat
gctgagaaggattacctgtatgatgtgctacggatgtatcatgaggccatggatgtctct
gtgctggtgggtgacctgaagctggtgatcaacgaacccaatcgcctgcctttgtttgat
gctgtccgacccctgatcccactgaagcatcaagtggaatatgaccagctgacacccaga
cgttccaggaaactcaaagaggtgcgtttggaccgaacgcatcctgaaggtctgggcatt
agtgtgcgtgggggcctggaatttggctgtggtcttttcatatctcacctcatcaaagga
ggacaagcagacaatgtcgggctgcagcttggtgatgagattgtacggatcaatggatac
tctatatcttcctgcacccatgaggagatcattaatctcatccggaccaagaagacagtg
tctatcaaagtgaggcacattggcatgatccctgtgaaaaactctcctgatgagtctctc
aagtggcagtttgtggaccagtttgtggcagagacaggggctggtaggggtgttcttccc
tttcttgggagtcgggaaaacagagaaaagaaagtcttcatcagtctgattggttctcga
ggcctggggtgcagcatttcaagtggtcccacccaaaaaccaggcatctttatcagcaac
gtgaaaccaggttctctgtctgcagaggttgggctggagacaggagatcagattgttgaa
gtaaatggcattgacttcacccacatggatcacaaagaggctgtgaatgtgctaaaaagc
agtcgaagcctgaccatctccattgtagctggagctggtcgagagctcttcatgacagag
agagagcggcaggcagaaatacggcagcgagagctggatcgacaagagttaatgctacag
aaacgtctggcaatggagtccaataaaatcctccaggagcagcaggagaaagagagacag
aggaagaaagagattgctcagaaggctgcagaagagaatgaacgatatcggaaagagata
gagcagatcaccgaagatgaagaaaggtttaagaagcaatgggaagaagaatggggcacc
aagggccagctgctaatgcccaagaccatcacagctgaggtgcatccaccacctccacgc
aagccaaagtcttttgggtggttttatcggtatgaaggcaaattcccaaccatcagaaag
aaagggaaagataagaagaaatctaagcacgacagcctgcaggaactgaggaagcacaag
aaggaaattgaatttgagcaaaagctttataaggagaaggaagagatgctggaaaaggaa
aaacaactgaagatcaaccggctagcccaggaggtgtcggaaactgagcgagaagaccta
gaggagtcggaaaagattcaatactgggtggaaaggctttgccagacccgcttagagcag
atctcctctgcagagaacgagctttcagagatgaccaccagtcccccatcttccgtgact
ctcctggccccacccctgcgacgcttcggtggcctgcaccttcacaccactgaccttgat
gacatccccttggacatgttctattaccctcccaagcgcccagcccctctaccaccacct
tctgcgctgcctgtgatgccccatcccccaacccctaacctaccgaccaaggtctcagca
cctcccatcattgtaccagctggccaggggtcttcctcttccacttgggtacggcgccca
ccacccccactccctccccctccatcagttcccactctggacctcaacttgtcccgatca
ctcccttctgcccttgaagaggccttggttaaccatggtctccattctggagacgcaacc
gaacctgtggaggactgggagctcaagaattataccgggagacccgcaagctcccccctc
cctgaacgaagcttccctccaactccaaagccactttgtccgagtccgatgcctccgcga
ggccctggtgtgtccaccatctccaaacccgtcatgattccttatgacttcaacttcgtt
ggcaggccagtggtcagatccgaggtcttgccacaagagatgctgaagaggatggtcgtt
taccagtcgccattcagaaaagatttcagaaaatatgaggaagactttaacccctattcc
atgttcctccgagagcaaatcatcgggaaagatgtccggcttctacgaattaaaaaggaa
gggtcattagatctagcagtcgaaggtggtgtagactccccaattggaaaaatcgtggtg
tctgccgtatacgaagatggggctgctgatcgtcatggtggaattgtgaaaggcgatgag
atcatggcaattaatggtaagattgtgacaggcttcaccttggcagaggcccaggcaact
ctacagaacgcctggcaccatggcgcggattggatagatctggtcattgcagtgtctcca
ccgaaggagtacgacgatgagctttcttctcttccctcctctgcagacagcagcccccag
ccactcagaaagagccttgaaggcagcgcccctgtgcacagacacgggttcctcctgcag
ctgtag
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