Mycolicibacterium doricum: MDOR_30740
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Entry
MDOR_30740 CDS
T06662
Symbol
ligD_1
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mdr
Mycolicibacterium doricum
Pathway
mdr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MDOR_30740 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdr03400
]
MDOR_30740 (ligD_1)
Enzymes [BR:
mdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MDOR_30740 (ligD_1)
DNA repair and recombination proteins [BR:
mdr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MDOR_30740 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BBZ08905
UniProt:
A0A1X1TJB5
LinkDB
All DBs
Position
complement(3121487..3123763)
Genome browser
AA seq
758 aa
AA seq
DB search
MVDQFGRVRLTNPDKVLYPATGTTKAEVFEYYVDVADAMLPHIAGRAVTRKRWPNGVGEP
EFFEKQLASSAPDWLKRGTIVHKSGTTTYPIIDTREGLAWLAQQASLEVHVPQWRFVGDT
DNLTPGPATRIVFDLDPGEGVTFRHLCEVAHEVRDLIADIGLNAYPLTSGSKGLHLYVPL
EAPISSQGASVLAKRVAQQLEKAMPKQVTATMTKSLRTGKVFLDWSQNNGNKTTIAPYSM
RGRAEPTVAAPRTWDEIEDPDLRHLRFDEVLERVEQFGDLLADLDEKVPVEDRLTKYRSM
RDPAKTPEPVPPRPPTVGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDSPSE
NRLAVHTEDHPMEYLTFHGTIPKGEYGGGDMIVWDSGTYDTEKFNDHAPDGPAKGGEVIV
TLHGSKVDGRYALIQTEGKNWLAHRMKDQGNPTFEDFAPMLATHGSVEKYTAKQWAFEGK
WDGYRLLVDADHGKLCLKSRSGRDVTGEYPQLRSLAADLADHHVVLDGEVVALDDKGVPS
FGELQNRARSTRVEFWAFDILRLDGRWLLKAKYRDRRKLLETLAGGGGLTVPPLLDGDGP
EALEHARERKWEGVVAKKWDSTYQPGRRSSAWIKDKLWNTQEVVIGGWRQGEGGRSSGIG
ALLLGIPGPDGLQFVGRVGTGFTEKDLANLKKTLAPLHTKESPFAARLPTQDAKGVTFVR
PELVGEVRYSERTGDGRLRQPSWRGLRLDKSPDEVVWE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtggtggatcaattcggtcgggtgcgcctgaccaatccggacaaggtgctgtatccggcg
acgggaaccaccaaggcggaggtcttcgagtactacgtcgacgtcgccgacgcgatgctg
ccgcacatcgccggtcgggccgtcacccgcaagcgctggcccaacggcgtcggcgagccc
gagttcttcgagaagcaactggccagctccgcacccgactggctcaagcgcggcaccatc
gtgcacaagtccggcaccacgacctacccgatcatcgacacccgtgaaggcctggcctgg
ctcgcccagcaggcctcgctcgaggtgcacgtgccgcagtggcggttcgtcggcgacacg
gacaacctcaccccgggacccgccacccgcatcgtgttcgacctcgaccccggcgagggc
gtcacattccgccacttgtgcgaggtcgcccacgaggtccgcgacctgatcgccgacatc
ggactgaacgcttacccgctgaccagcggcagtaagggtctgcacctttacgtcccgctg
gaggcgccgatcagcagccagggcgcctcggtgctcgccaagcgcgtcgctcagcagctc
gagaaggccatgcccaaacaggtcacggcgacgatgacgaagagcctgcgcaccggcaag
gtgttcctcgactggagccagaacaacggcaataagaccaccatcgcgccgtactcgatg
cgtggccgtgccgagccgaccgtcgcggcgccgcgcacctgggatgagatcgaggacccc
gatctacggcacctgcgcttcgacgaggtgctcgagcgcgtcgaacagttcggcgacctg
ctggccgacctcgacgagaaggtgcccgtcgaggaccggctgacgaagtaccgcagcatg
cgggaccccgccaagactcccgaaccggttccgccacgcccgccgaccgtcggcaacaac
gaccgcttcgtcatccaggaacaccacgcccgacggttgcactacgacctgcgcctggaa
cgcgacggcgtcctggtcagctgggcggtgccgaagaacctgcccgacagcccgtcggag
aaccgcctcgccgtgcacaccgaggaccatccgatggagtacctgaccttccacgggacc
atcccgaaaggtgagtacggcggcggcgacatgatcgtctgggacagcggcacgtacgac
accgagaagttcaacgaccacgccccggacggtcccgccaagggcggtgaggtgatcgtc
acgctgcacggcagcaaggtcgacggccgttacgcgctgatccagaccgagggcaagaac
tggctcgcgcaccggatgaaggatcagggcaacccgaccttcgaggatttcgcgccgatg
ctcgccacccacggctcggtcgagaaatacaccgccaaacagtgggcgttcgaaggaaag
tgggacggctaccggctgctggtcgacgccgaccacggcaagctctgcctgaaatcccgc
agcggccgcgacgtcaccggcgagtatccccaactacgttccctcgcagccgatctcgcc
gaccatcacgtggtgctcgacggggaggtcgtcgcgctcgacgacaagggtgtgcccagt
ttcggggagttgcagaaccgcgccaggtccacccgcgtcgagttctgggcgttcgacatc
ctgcgtctcgacggccgctggctgctgaaggcaaagtaccgggaccgccgaaagttgttg
gaaaccctggctggtggtggcgggctgaccgttccgccactgctcgacggtgacggcccc
gaggcgctcgaacatgcccgcgaacgcaagtgggaaggcgtggtcgccaagaagtgggac
tccacctaccagcccgggcggcgctcgtcggcgtggatcaaggacaagctgtggaacacc
caggaagtggtgatcggcggctggcggcaaggtgagggtgggcgcagcagtggtatcggc
gcgttgctcctcggtatccccgggccggatggactgcagttcgtcggacgtgtcggcacc
gggttcaccgagaaggacctggcgaacctgaagaagacgctcgctccactgcacaccaag
gaatcgcccttcgccgcaaggcttcccacccaggacgccaaaggtgtgacgttcgtccgg
cccgaattggtgggcgaggtgcgctacagcgaacgcacgggtgacggcaggctgcgccaa
ccgtcgtggcgcgggctgcgcctggacaaatcgcccgacgaggtggtgtgggagtag
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