Mycolicibacterium duvalii: MDUV_52570
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Entry
MDUV_52570 CDS
T06492
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mdu
Mycolicibacterium duvalii
Pathway
mdu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MDUV_52570 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdu03400
]
MDUV_52570 (ligD_2)
Enzymes [BR:
mdu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MDUV_52570 (ligD_2)
DNA repair and recombination proteins [BR:
mdu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MDUV_52570 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
BBX20397
UniProt:
A0A7I7K8R2
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All DBs
Position
5471428..5473707
Genome browser
AA seq
759 aa
AA seq
DB search
MVDRYDRVKLTNPDKVLYPATGARSEPVTKAEVFDYYINVAAGMLPHIAGRAVTRKRWPN
GVEQEAFFEKQLASSAPDWLDRATLVHKSGSTTYPVIDTVEGLAWIAQQAALEVHVPQWR
FEQGEMGPATRVVFDLDPGEGVTFRQLCEVAHEVRDLITDIGLRTFPLTSGSKGIHLYVP
LDVPISSRGASVLAKRVAQQLEQMMPKQVTATMTRSLRAGKVFVDWSQNNGNKTTIAPYS
LRGREHPTVAAPRTWEEIEDPDLRHLMFDEVLDRLDRDGDLLADLDPPLPVPDRLTRYRS
MRDTAKTPEPIPPDAPKTGNNDAFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETPA
VNHLAVHTEDHPMEYLTFAGEIPKGEYGGGEVYIWDTGTYETEKFNDHPPDGPDKGGEVI
VTLHGNKIRGRYALIQTGGKNWLAHRTKDQPGLSVTDLSPMLTTEGSVERLTKGQWAFEG
KWDGYRLLVEADHGSLSLRSRRGRDVTAEYPQLQALAADLAEHHVILDGEAVALDESGVP
SFGEMQNRARSTRVEFWAFDMLFLDGRSLLKAKYSDRRKVLEALAEGGGLIVPAQLPGDG
PEALEAARKQRWEGVVAKKRDSTYQPGRRSSAWIKDKLWNTQEVVIGGWRQGEGGRTSGI
GALLLGIPGEDGLQFVGRVGTGFTDKELAALKKTLAPLHTDESPFAAPLPRQDAKGVTFV
RPELVGEVRYSERTSDGRLRQASWRGLRDDKTPDEVVWE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
gtggtggaccgttatgaccgggtgaagttgaccaacccggacaaggtgctgtaccccgcg
acgggcgcgcggtcggagccggtcaccaaggccgaggtcttcgactactacatcaatgtc
gcagcgggaatgctgccgcacatcgccgggcgcgcggtgacccgcaaacggtggcccaac
ggcgtcgagcaggaagccttcttcgagaagcagctggcctcgtcggcgccggactggctg
gaccgcgccactctcgtccacaagtcgggcagcaccacctacccggtgatcgacaccgtc
gaggggctggcctggatcgcgcagcaggcggcgctggaagtgcacgtgccgcagtggcgc
ttcgagcagggcgagatgggtccggcgacgcgtgtggtgttcgatctggatccgggcgag
ggggtgacgtttcgccagctgtgtgaggtggcccatgaggtgcgggatctgatcaccgac
atcggcctgagaactttcccgctgaccagcggcagcaaggggatccacctgtacgtcccg
ttggatgtgccgatcagctcgcgcggtgcgtcggtgctggccaagcgggtggcgcagcag
ctcgaacagatgatgcccaagcaggtcaccgccaccatgaccaggagtctgcgtgcgggc
aaggtgttcgtggactggagccagaacaacggcaacaagaccaccatcgccccgtactcg
ttgcgcggacgcgaacacccgaccgtcgccgcaccgcgcacctgggaggagatcgaggac
ccggacctacggcacctgatgttcgacgaggtgctcgaccggctggaccgcgacggcgat
ctgctcgccgacctcgacccgccgctgccggtacccgaccggttgacccgctaccgcagc
atgcgcgacaccgcgaagacgcccgaaccgattccgccggacgcgccgaaaacgggcaac
aacgatgcgttcgtcatccaggagcaccatgcccgccgattgcactacgacttccggctg
gaacgtgacggcgtgctggtcagctgggcggtcccgaagaacctgcccgaaaccccggcc
gtgaaccatctcgccgtgcacaccgaggaccatccgatggagtacctcaccttcgccggc
gagatcccgaagggggagtacggcggcggcgaggtttacatctgggacaccggcacctat
gagaccgagaagttcaacgaccatccgcccgacggtcccgacaagggcggggaggtgatc
gtcaccctgcacggcaacaagatccggggccgctatgcgctgatccagaccggcggcaag
aactggctcgcgcaccggaccaaagaccagcccggtctgagcgtcaccgacctgtccccg
atgctgaccaccgaagggtccgtggaacggttgaccaagggacagtgggctttcgaaggc
aaatgggatggctatcggctgctcgtcgaggccgatcacgggtcgttgtcgctgcggtcg
cgccgcggacgtgatgtcaccgccgagtacccgcagctgcaggcgctggccgctgacctc
gccgagcaccacgtgatcctcgacggcgaggcggtcgcgctcgacgagtccggagtgccc
agcttcggcgagatgcagaaccgggcccggtccacgcgggtggagttctgggccttcgac
atgctgttcctcgacggtcggtcgctgttgaaagccaagtactccgatcgccgcaaggtg
ctcgaagccctcgccgagggcggtgggttgatcgtgcccgcgcagctgcccggcgacgga
cccgaggccctggaggccgcgcggaagcagcgatgggagggcgtcgtcgccaagaagcgc
gactccacctaccagcctggccggcggtcgtcggcgtggatcaaggacaagctgtggaac
acgcaggaagtcgtgatcgggggttggcggcaaggtgaaggcgggcggaccagtgggatc
ggcgccctgctgctcggcatcccgggcgaggacggattgcagttcgtcggccgtgtcggt
accggcttcactgacaaggagctggcggccctgaagaagactttggcgccactgcacacc
gacgaatcacccttcgccgcaccgcttccccggcaggatgccaagggtgtgaccttcgtg
cgtcccgagctggtgggggaggtgcgctacagcgaacgcacctccgacggacgcctgcga
caggcgagttggcgtggcctgcgtgacgacaagacgcccgacgaggtcgtctgggaatag
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