Methanobrevibacter sp. AbM4: Abm4_0234
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Entry
Abm4_0234 CDS
T02687
Symbol
dnlI
Name
(GenBank) ATP-dependent DNA ligase DnlI
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
meb
Methanobrevibacter sp. AbM4
Pathway
meb03030
DNA replication
meb03410
Base excision repair
meb03420
Nucleotide excision repair
meb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Abm4_0234 (dnlI)
03410 Base excision repair
Abm4_0234 (dnlI)
03420 Nucleotide excision repair
Abm4_0234 (dnlI)
03430 Mismatch repair
Abm4_0234 (dnlI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meb03032
]
Abm4_0234 (dnlI)
03400 DNA repair and recombination proteins [BR:
meb03400
]
Abm4_0234 (dnlI)
Enzymes [BR:
meb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Abm4_0234 (dnlI)
6.5.1.6 DNA ligase (ATP or NAD+)
Abm4_0234 (dnlI)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
Abm4_0234 (dnlI)
DNA replication proteins [BR:
meb03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Abm4_0234 (dnlI)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
Abm4_0234 (dnlI)
DNA repair and recombination proteins [BR:
meb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Abm4_0234 (dnlI)
NER (nucleotide excision repair)
Other NER factors
Abm4_0234 (dnlI)
MMR (mismatch excision repair)
Other MMR factors
Abm4_0234 (dnlI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Baculo_PEP_C
Chromo_2
Arc_PepC
Motif
Other DBs
NCBI-GeneID:
15797728
NCBI-ProteinID:
AGN16150
UniProt:
R9SI60
LinkDB
All DBs
Position
complement(289555..291207)
Genome browser
AA seq
550 aa
AA seq
DB search
MKYQELVDVYEALAATTKRLDKTEILSNFFKTVDSELIDKVTLLCLGKVFPSWSEEEQGI
GDKLVMKAVADVAGVSVLDVENEVNNQGDIGAASEVLVENKKQMTFFSQALTIEFVFNNL
RKLAKISGEKSTSRKISIILELLSSASATESKYICRTIVEQLRIGVGEGIIRDSLSDAFG
IDKKIVDRATMLTNDLGLVAKVGETEGAEGLEKLNLTPGKPVKLMLAQLSEGIDISINEM
KKALCETKYDGIRCQIHKHNGEVTLFTRRLENITKAIPEIVDAVNKGLPDEDFVAEGEII
AMRDGKPLSFQNILHRVRRKYNIEEAMENIPVELYLYDLLYYKKPLIDEAMEKRREILES
ITDTSTDMINLSELVICTPDNVKDAQDLFKRSIAGGHEGIMIKNAFEPYIPGVRGKKMLK
YKAEPENLDAVVVGGTKGIGKRGEFIGSYLIALQDEDENLKTVAQVGTGLTDEQLEELTK
KMEEYKISQKGTKITVEPRIIFEVAYSEIVKSPEYEAGYSLRFPVVKRIREDKGLKDIDT
VERLKSMYKE
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatcaagaattggttgatgtttatgaagcactagctgccaccacaaaaagatta
gataaaactgaaatactttcaaatttcttcaaaaccgttgacagcgagcttattgataaa
gtcacattattatgtctaggtaaagtttttccctcctggagtgaagaggaacagggaatt
ggagataaacttgtaatgaaagccgttgctgatgtagcaggcgtaagtgtacttgatgtt
gaaaatgaggtaaacaaccagggagatattggagctgcaagtgaggttcttgtagaaaat
aaaaaacagatgacatttttctcacaggcacttacaattgaattcgtctttaacaatctc
aggaaactcgctaaaatctcaggcgaaaaatcaacctccagaaaaatatcaattattctt
gaattactctcctctgcaagtgctacagaatccaaatacatatgtagaacaattgtggaa
caattacgtattggtgttggtgagggtattataagggatagcctttccgatgcatttgga
attgataaaaaaattgttgatagggccaccatgctaacaaatgatttgggacttgttgca
aaagtcggagaaaccgaaggtgcagaaggacttgaaaagttaaatctaacaccgggaaaa
cctgtaaagctaatgcttgcacagttgtctgaaggtatcgatataagcattaatgagatg
aagaaggcattatgtgaaacaaaatatgatggaatcagatgccaaatacataaacacaat
ggtgaggtaaccctatttacaagaagacttgaaaatattacaaaagcaattccggaaatt
gtggatgctgtaaataaaggtttaccagatgaggactttgttgcagaaggtgaaattatt
gcaatgcgtgatggaaaacccttatccttccagaatatcctacatcgtgtaagacgtaaa
tacaatattgaagaggcaatggagaatatccctgtagaactttatttatatgatttatta
tattataaaaaaccgcttattgacgaggcaatggagaaaagacgtgaaattctcgaatca
attaccgacacctcaacggatatgattaatctaagcgaactcgtaatatgtactcccgat
aatgtcaaggatgctcaggatttatttaagagatccattgctggaggtcatgagggtatt
atgattaaaaacgcatttgaaccatatattccaggagtacgtggtaagaaaatgctcaaa
tataaagcagaacctgaaaaccttgatgccgttgttgttggtggaaccaaaggtattggt
aaaagaggggagttcataggatcttatcttatagcacttcaggatgaggatgagaatctt
aaaactgttgctcaggttggtacaggcctcactgatgaacaattagaggagcttactaaa
aagatggaagaatataaaatctcacagaaaggtacaaagattacagtagaacctagaata
atatttgaagttgcatatagtgagattgtaaaaagtccagaatatgaggcaggatattca
ttaagatttccagtagttaaaagaataagggaagataaaggccttaaagacatcgatact
gttgaaagacttaaatccatgtataaggaataa
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