Metabacillus sp. B2-18: LPC09_21695
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Entry
LPC09_21695 CDS
T09916
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mebz
Metabacillus sp. B2-18
Pathway
mebz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mebz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPC09_21695 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mebz03019
]
LPC09_21695 (rnr)
03016 Transfer RNA biogenesis [BR:
mebz03016
]
LPC09_21695 (rnr)
Enzymes [BR:
mebz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPC09_21695 (rnr)
Messenger RNA biogenesis [BR:
mebz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPC09_21695 (rnr)
Transfer RNA biogenesis [BR:
mebz03016
]
Prokaryotic type
tRNA degradation factors
LPC09_21695 (rnr)
BRITE hierarchy
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
UGB30284
LinkDB
All DBs
Position
complement(4283201..4285546)
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AA seq
781 aa
AA seq
DB search
MDQEIQVHIDKLLSFMKEEAYKPLTVQELEQAFGIEDSTEFKDFVKALVVMEDQGLVVRT
RSNRYGLPEKMNLIKGKLIGHSKGFAFVDPEDTALDDIFIPPTELKTAMHGDVVMVRVSA
STGGTRQEGTIVRILERGITEVVGTYTESKNFGFVVPDDKKIANDIFIPKNASKGAVEGH
KVVVKLTTYPEGRMSAEGEVIDILGHKNDPGVDILSVIHKHGLPGPFPVEALEQANDVPE
TIKEEDLKDRRDLRNETIVTIDGADAKDLDDAVTVTKLDNGHYKLGVHIADVSHYVTEQS
PIDREALDRATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEIDEKGTVVKHEI
FQSVIKTTERMTYSDVNKILEDRDEELLKKYESLIPMFEQMGELAAVLRQKRMERGAIDF
DFKEAKVLVDKEGKPTEVVIRERSVAERLIEEFMLLANETVAEHFHWMNVPFIYRIHEDP
NAEKLQKFLQFITNFGYSVKGAGNEIHPRALQDILEEVQGKPEETVISTVMLRSMKQAKY
DPESLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKVDEETRAHWAESLPVIAE
QSSNMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGMFVELPNTIEGLIHVS
YMTDDYYRYDEQHYAMIGERTGNVYRIGDEITVRVVNVNKDERAIDFEIVGMKGTRRRPE
KDKPKVIIAGKGRKDSNGRGGGNNSKTRGNDKDGEWSTRPPRKKKKKHFENAPKAKRKKK
R
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagaaattcaagtacatattgataagctgctttcgtttatgaaagaggaagct
tataagcccctaactgttcaagagcttgagcaagcatttggaatagaggattcaacggag
tttaaagactttgtgaaagcattagttgttatggaggatcagggcctcgttgtaagaaca
agaagcaaccgttacgggttgccagaaaaaatgaatttaattaaagggaagctaattggt
cactcaaaaggatttgcttttgttgaccctgaggacactgctttagatgatatctttatt
ccacctactgaattgaaaacggctatgcacggtgatgttgttatggtcagagtcagtgca
agcacaggtgggacaagacaagaaggaacgattgtccgtattttagagcgtggaataaca
gaggttgttggtacttatacggaaagcaaaaactttggttttgttgttcctgatgataaa
aaaatcgccaatgatatttttattcctaaaaatgcatcaaagggtgctgtagagggacat
aaggttgttgtgaaattaacaacttatcctgaaggacgcatgagtgcagaaggggaagtt
attgatattcttggtcataaaaatgatccaggtgttgatattttatccgttattcataag
cacggattgccaggcccattcccggttgaagcactcgagcaagcaaacgatgttccagag
acgataaaagaagaagatcttaaagacagacgtgatttaaggaacgaaacaattgttaca
attgatggagccgatgcaaaagatttagatgacgcagttacagtaacaaagttagataat
ggccactataagctgggtgttcatatcgctgatgttagtcattatgtaacagagcaatca
ccaattgatcgcgaagcattagaccgcgcaacaagtgtgtatcttgttgaccgtgtgatt
ccaatgattccacatcgtttatcaaatggaatttgttctttaaatcctaaagtggatcgt
ttaacactttcttgtgagatggaaatcgatgaaaaaggaacagttgttaaacatgaaatt
ttccagagtgtgataaaaacaacagagcgtatgacgtactctgatgtaaataaaatttta
gaagaccgcgatgaagagcttctaaaaaaatatgaaagtcttattccaatgtttgaacaa
atgggtgagcttgcagcagtactgcgccaaaagcgtatggagcgtggtgccattgacttt
gattttaaagaagcaaaggtgcttgtcgacaaagaaggaaagccaacggaagttgtgatt
cgcgaacgctcagtagcagagcgtcttattgaagagtttatgctgcttgccaatgaaaca
gtagcagagcacttccattggatgaatgtaccgtttatatatcgaattcatgaagatcca
aatgctgaaaaactacaaaaatttcttcagttcattacgaattttgggtactcagtaaag
ggtgcaggaaatgaaattcatccaagagcattgcaagatattttagaagaagtacagggt
aaaccagaagaaacagttatctcaacagttatgctccgttcaatgaaacaggcgaaatac
gatccagaaagcttaggtcactttggactagctacggagttttacacacattttacatca
ccaattcgtcgttatcctgatttaattgtgcatcgtttaatccgcacatatctaatagaa
ggaaaagttgatgaagaaactcgtgcacattgggcggaaagcttacctgtgatcgctgaa
caatcctccaacatggaacgaagagcggtagaggcagagcgtgaaacagatgaactgaaa
aaagcggagtacatgcttgataaaattggcgaagaatatgacggtatgatcagttctgtt
acaaacttcggtatgttcgtggaacttccaaatacaatagaaggtcttattcacgtcagc
tatatgacagatgattattaccggtatgatgagcaacattatgcgatgattggtgaacgt
actggtaatgtctacagaattggtgacgaaattactgtacgtgtagtaaatgtaaacaaa
gacgagcgcgctattgatttcgaaattgttggtatgaaagggacaagaagacgtcctgaa
aaagacaaaccaaaagtcatcattgctggtaaaggaagaaaagattccaatggtcgtggc
ggcggtaataacagcaaaacacgtggaaatgacaaagatggcgaatggtcaacacgtcct
cctcgtaaaaagaagaaaaagcactttgaaaatgcaccaaaagcaaaacgtaagaaaaaa
cgctaa
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