Methylophaga frappieri: Q7C_2391
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Entry
Q7C_2391 CDS
T02056
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mec
Methylophaga frappieri
Pathway
mec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q7C_2391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mec03021
]
Q7C_2391
03400 DNA repair and recombination proteins [BR:
mec03400
]
Q7C_2391
Enzymes [BR:
mec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q7C_2391
Transcription machinery [BR:
mec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q7C_2391
DNA repair and recombination proteins [BR:
mec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q7C_2391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AFJ03521
UniProt:
I1YKS8
LinkDB
All DBs
Position
2391530..2395726
Genome browser
AA seq
1398 aa
AA seq
DB search
MKDLINLLKQQSQPEEFDAIRIGLASPKMVRSWSFGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTVTKVRRERMGHIELASPVAHIWFLKSL
PSRISLFLDMTLRDIERVLYFEAFIVVDPGMTPLEKGQLLSDEMFLNAMEEYGDEFDARM
GAEAIQELLRAIDLRKEIDTIREEINGTNSETKIKKLSKRLKLMEAFLDSGNKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNRMPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LKLHQCGLPKKMALELFKPFIYGKLERRGLVTTIKAAKKMVEREVPEVWDVLEEVIREHP
VMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RSLMMATNNILSPANGEPIINPSQDVVLGLYYMTRDLVNEKGEGSRFADITELRRAYDNK
AVSLHAKITVRIDETDITRPEPEQNRRIRVETTVGRAILFSIVPKGLPFSVVDRTMTKKA
ISDLINTCYRRLGLKDTVIFADQLMYLGFNQATMSGASVGADDMVIPAQKVDILAKAEAE
VEEIANQYASGLVTDGERYNKIIDIWSRTNDQIAKAMMEGIGKDLIVDKDGKEIEQQSMN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDLVVVEEDCGTAHGLSMTPIIEGGDVVEGLGERVL
GRVVAQDVINSEQKVVLEAGRIIDEACVSLLEREGIDEVMVRSAITCESRYGVCSACYGR
DLGRGHRINVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAADNSVVLKFKGRIRYY
NIKSVENKAGKFVAVSRSGELHLIDENGRERERYKIPYGAEITVADNDAVESGQVVANWD
PHTHPVVTEVKGHVRLSDLVEGVTVDKQVDDVTGLTSLIIREPKQRNSSAKDMRPMVKLV
DDNGNDVNIIGTDIPAQYFLPGGAIVRVTDGMEVEVGDILARIPQESSKTRDITGGLPRV
ADLFEARKPKDPALMAEISGTISFGKETKGKQRLIITPKEGDTHEELIPKWRHVSVFEGE
HIEKGEMIVDGPEDPHDILRLKGVLALANYMVSEVQEVYRLQGVKINDKHIEVIVRQMLR
KVEIDAPGDTKFLKGEQVEFDRVLEANDEMRSENKIEALFTPLLLGITKASLATESFISA
ASFQETTRVLTDAAVTGKSDNLRGLKENVIVGRLIPAGTGLAYHKERQRRRQVAMPEVVE
TISAESVENTEEETNETS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgattaatctcttaaagcaacaaagtcagccggaagaattcgatgcaatt
cgtattggtttggcttcacccaaaatggtccgaagctggtcatttggtgaggttaaaaaa
ccggagaccatcaactatcgtacttttaagccagagcgtgaaggtctgttctgtgcgaaa
atttttggcccagtcaaagattatgagtgtttgtgtggcaaatacaaacgtctcaagcac
cgcggtgtgatatgtgaaaaatgtggtgttgaagtcacggttaccaaagtccgtcgtgag
cggatggggcacattgagttagcgtcaccggtagcacatatctggtttctgaaatcactg
ccgtcacgcatttcattatttttggatatgacgttacgtgatattgagcgcgtgttgtat
ttcgaagcctttatcgttgttgatcctggtatgacaccgttagaaaaaggccagttgttg
tcagatgaaatgtttctgaacgcaatggaagaatacggtgatgagtttgatgcacgcatg
ggggctgaagcaattcaggagctgctgcgggccatcgatttgcgcaaagaaatcgataca
attcgcgaagaaatcaacggtaccaactcagaaacaaaaattaaaaaactcagcaaacga
ctgaaattaatggaagcattcttggattctgggaataagccagaatggatggtcatggag
gtgttgcccgtactgccaccagatctgcgtccattagttccgcttgacggcggccggttc
gccacctcagatctaaacgatctgtatcgtcgcgttattaaccgtaataatcgtctgaaa
cgcctgttggatctcaatgcaccggatatcattgttcgcaatgaaaaacggatgttgcaa
gagtctgtcgatgcgctattggataatggtcgtcgtggacgtgccatcaccggcaccaac
cgaatgccgctgaaatctttggcagatatgatcaagggtaagcaaggtcgattccgtcaa
aacctgttgggtaaacgtgtcgactattcaggccgttctgttatcgtcgttggcccctac
cttaaattacaccagtgtggtttgcctaagaaaatggcacttgagctatttaaaccattt
atctacggcaaactggaacgccggggcttggtgaccacaatcaaagccgccaaaaaaatg
gttgagcgggaagtgcctgaagtttgggatgtactggaagaggttatccgtgaacatccg
gttatgttaaaccgcgcaccgacccttcaccgattaggtattcaagcgtttgaaccttta
ttgattgaaggtaaagcaattcagctgcacccactcgtttgtgccgcgttcaatgctgac
tttgacggtgaccaaatggcggtgcacgttccattgtcactggaggcgcaacttgaagcc
cgttcactgatgatggcgactaataatattctgtcgcctgcgaatggtgagccaatcatt
aatccctctcaggacgtggttcttggtttatattacatgacccgggatctggttaacgag
aaaggcgaaggcagtcgttttgccgatattaccgagctgcgtcgtgcctatgacaacaaa
gccgtatcgctgcatgccaaaatcaccgtacgtattgatgaaaccgatatcacgcgtccc
gagcctgagcaaaaccggcgtattcgagtagaaacaacagtaggtcgcgcgatattgttt
agtattgtcccgaaaggattgccgttttctgtagtggatcgcaccatgaccaagaaagcg
atcagtgatctgattaatacttgttaccgccgtttaggcctgaaagatacggttatcttt
gcagatcaattaatgtatctcggctttaatcaagcgacgatgtcaggtgcgtcagttggt
gctgatgatatggtcattccagcccaaaaagtcgatatccttgccaaggctgaagcggaa
gtagaagaaatcgcaaatcaatatgcttctggtctggttaccgatggcgaacgctacaac
aaaatcattgatatctggtcacgaaccaacgatcagattgccaaggcaatgatggaaggg
atcggtaaggatttgattgttgataaagatggcaaagaaatcgaacaacaatcaatgaat
tcaatctatatgatggccgattccggtgcccggggtagcgcggcgcagattcgtcagctg
gcaggtatgcgtggactgatggcaaaaccggatggttccatcatcgaaacaccgatcacg
gcgaatttccgtgaaggtctggacgtattgcagtacttcatctccactcacggtgcccgt
aaaggtctggccgatacggctttgaaaacggccaactccggttatctgactcgtcgtctg
gtcgatgtttctcaggacttggttgtcgtcgaagaagattgcggcacagcgcacggtctg
agtatgacaccaatcatcgaaggcggcgacgtagtcgagggcttaggtgaacgtgttctt
ggtcgtgtggttgcgcaagatgtaatcaatagtgaacaaaaagtggtactggaagcgggc
agaattatcgatgaagcctgtgtcagcctcttggaacgtgaaggtattgatgaggtaatg
gtacggagtgcgattacctgtgaatctcgctatggtgtttgtagcgcctgttatggtcgt
gacttgggacgcggtcaccgcattaatgttggcgaggcagtcggcgttatcgctgcacag
tcaattggtgaaccgggtacgcagctgaccatgcggacattccatatcggtggtgcggct
tcacgtaccgcggcagataactcggttgtgcttaaattcaaaggccggattcgttattac
aacatcaagtcggtagagaacaaggcgggtaaattcgttgcagtttcacgctcaggtgag
ttgcacctgattgacgaaaatggccgcgaacgtgagcgttataaaatcccctacggtgcg
gaaatcacggtagcagataatgatgcagtggaatcagggcaagtcgttgccaactgggat
ccacacacgcatccggttgtgacggaagtaaaaggtcatgtccgtctcagtgacttggtt
gaaggtgtgaccgttgataagcaagtggatgatgtgactggtttgaccagtttgattatc
cgtgagccaaaacagcgcaacagctcagctaaagatatgcggccgatggttaaactggtt
gatgataatggcaatgacgtcaatatcatcggtaccgatattccggcacaatacttcttg
ccagggggcgcgattgtgcgtgttaccgacggcatggaagtggaagttggtgatatcctg
gcgcgtattccacaagaaagtagtaagacccgtgatatcacgggtggtctgccgcgtgtt
gctgatttgtttgaagcacgtaaaccgaaagatccggctttgatggctgaaatcagtggc
accattagttttggtaaagagactaaaggcaagcaacgcctgattatcactccgaaagaa
ggggatacgcatgaggagttaattccaaaatggcgtcatgtctctgtctttgaaggtgag
cacatcgaaaaaggcgagatgattgttgatggaccggaagatccgcacgatattttgcgt
ttgaaaggggtgttggcattagctaattatatggttagcgaagttcaggaggtataccgc
cttcagggtgttaaaatcaacgataaacacatcgaagtgattgtgcgtcagatgttgcgt
aaagttgaaattgatgcgccgggcgataccaaattcctgaaaggggagcaggtcgagttt
gatcgtgttctggaagctaacgatgaaatgcggtcggaaaacaaaattgaagcgctgttt
accccattattgctgggtataaccaaagcatcactggcaacagagtcatttatttcagcc
gcatcattccaggaaaccacgcgtgtattgaccgatgctgcggtcactggcaagagcgac
aatctgcgcggactgaaagaaaatgtcatcgtaggtcgattgattcctgccggtaccggt
ctggcttatcataaggaacgccaacgccgtaggcaggttgcaatgccagaagtagtagaa
acaatttcagcagaaagtgttgaaaatacagaggaagaaaccaacgagacatcttag
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