Methylocapsa sp. D3K7: QEV83_06200
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Entry
QEV83_06200 CDS
T08996
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
medk
Methylocapsa sp. D3K7
Pathway
medk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
medk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QEV83_06200 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
medk03400
]
QEV83_06200 (ligD)
Enzymes [BR:
medk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QEV83_06200 (ligD)
DNA repair and recombination proteins [BR:
medk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QEV83_06200 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WGJ15844
LinkDB
All DBs
Position
1370490..1373114
Genome browser
AA seq
874 aa
AA seq
DB search
MAKTLTVYRSKRDFTKTPEPDSSGKVAPSATRRYVIQKHAARRLHYDLRLELDGVFKSWA
ITRGPSLDPRDKRLAVEVEDHPLEYGDFEGIIPKGQYGGGTVQLWDRGVWTPEGRDSPDA
TLEKGELKFTLDGTRLHGSWVLVRIKNDRKARRHANWLLIKHRDNAAQDGDGDALLAEDR
SVASGRSMEMIAAGKGKRPMPFMTREDTKLAANAVWDSTGGASDSKRSGRIASNKLRRSV
SLVMPDFVAPQLCTPVERPPDGAGWVHEIKFDGYRMQLRVDGGKANLKTRKGLDWSAKFA
AIANAACNLPDAMIDGEIVALDTSGVPDFAALQAALSEGRTDDLMFFAFDLMFDANGDLR
KRPLSERKAKLRDLLSDLGNDGVIRFTQHFESGGEAILRSACRLSLEGIVSKKLDASYHS
GRGRNWLKAKCRAGHEVVIGGWTTTNERLRSLLAGVYRGDHLVYIGRIGTGYSAAKIKTL
LPRLQAVAANTSPFTGIGAPRKEDNIHWTTPELVAEIEFTGWTGDGMVRQAAFKGLREDK
PAEDVTAEKPAKASHAKLPQPLVPVTPARINAAKKPLVMGVMLSNPGKELWPDAGDGSPV
SKLDLANYYEAVGSWMLGHLQGRPCSIIRAPDGISGSQFFQRHAMPGTSNLLELVTVSGD
RKPYLEVDRVEGLAALAQIAALELHPWNCQPQQPDVPGRLVFDLDPGPDVAFSTVVAAAR
DMREQLDELGLVSFCKTTGGKGLHVVTPLALSKKSKLTWPVAKDFAHQICLRLAHENPQR
YVVNMAKKLRTGRIFLDYLRNDRTATAVAPLSPRARPGALVSMPLTWTQVKSDLAPQRFT
LRTAPALIRRSKAWADYDESRQPLEDAIKRLGKT
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaactctaacggtctatcgttcgaaacgggatttcaccaaaacgccggagccg
gacagttctgggaaggtggcaccgtcggccacacgccgctacgtcatccaaaagcatgcc
gcccggcgcctccactatgatctgcgccttgagcttgatggcgttttcaaatcctgggca
atcacccgtggcccatcgcttgatccccgtgacaaacgactcgccgtcgaggtggaagat
catcctctcgaatatggcgactttgaaggcataattccgaaaggacaatatggcggcggc
accgtgcaactctgggaccgcggcgtctggacgccggaaggacgcgactcgccagacgct
actttggagaagggcgagttgaagttcacgctcgatgggacgcggctgcatggcagttgg
gttctggttcggattaagaatgatcgtaaagcgaggcggcacgcaaactggcttctgatc
aaacatcgcgacaatgcggcgcaagacggcgacggcgatgctctgcttgcggaggaccgt
tccgtcgcctcggggcggagcatggaaatgatcgctgctggaaaaggcaagcggcctatg
ccgttcatgacccgcgaggatacaaagctggcagcgaacgccgtctgggattcgaccgga
ggcgccagcgatagcaagagaagcggccgcatcgcatcgaacaagctccgccgctccgta
tccctcgtgatgccggatttcgtggcaccgcaactttgcacgccagtcgaacgtcccccg
gatggggctggctgggtgcacgagatcaagtttgatggataccgcatgcagctgcgggtg
gacggcggcaaggccaatctcaagacccgtaaaggtctcgattggtcggcgaagtttgcc
gcgattgcaaatgcggcatgcaatcttcccgacgcgatgatcgacggtgagatcgtcgca
ctcgatacgagtggggtgcccgatttcgccgcgcttcaggccgccttgtcggagggacga
acggacgatctgatgttttttgccttcgaccttatgttcgatgcgaatggcgacttgcgc
aaacgcccgctctctgagcgcaaagcgaaattgcgggatttgctatcggacctcggcaac
gatggcgtgattcgctttacccaacatttcgagagcggcggcgaggcgatcttgcgttcc
gcatgccgtttatctttggaaggcatcgtatcgaagaaactcgacgcatcctaccactcg
ggacgcggacgcaactggctgaaagccaaatgccgggcgggacatgaggttgtaatcggc
ggatggacgacgacgaatgaaagattacgatctttgctcgccggcgtttatcggggcgat
cacctcgtttatattggccgcattggaacgggctacagcgccgcgaaaataaagactctc
ctgccccgcctgcaagctgttgcggcaaacacatcgccattcacgggcataggggcgccg
cgcaaggaggacaatatacattggacgacgccagaactcgtcgcggagatcgaatttacc
ggctggactggcgatggcatggtacggcaagccgccttcaagggcttgcgcgaggataaa
cccgcggaagatgtcacagccgagaagccggccaaagcgagccatgccaagctgccgcag
cccttagttcctgtgacaccagcgcggatcaatgctgcaaagaagccactggttatgggc
gtcatgctgtccaatcccggcaaggagctttggcccgacgcaggcgatgggtcgccggtt
tccaagctcgatctcgcgaattactatgaggcggttggaagctggatgctcggtcatctt
caggggcgcccatgttcgatcatccgcgcgccggacggcatctccggatcgcagttcttt
caacgtcatgctatgccgggcacatcgaatcttctcgaactcgtcacggtctctggcgac
cgcaaaccttatcttgaagttgatcgggtcgaaggcttggcggcactggcgcaaatcgcc
gctctcgaactgcatccctggaactgccaaccacagcagcccgacgtcccaggccggctc
gtgtttgatctcgatcctgggccagatgtcgccttttcgaccgtcgtcgcggcggcccgt
gacatgcgggagcaattagatgagcttggtcttgtcagcttttgcaaaactacaggaggc
aaggggcttcatgtcgtcacgccgctggccctttcaaagaaaagcaagctgacctggcca
gtggctaaggatttcgcgcatcaaatatgcttacggctggcgcacgaaaatccgcagcgt
tacgtcgtgaacatggcaaagaagctgcgcaccggccgcatttttcttgattacctccgt
aatgatcgcacggcgacggcagtggcgcccttatcaccgcgcgcccggcctggggcgctc
gtttcgatgccgctgacgtggacacaggtgaagtcagacctggccccgcagcgatttacc
ctccgaacggcccccgctctgatccggaggagtaaggcatgggcggattatgacgaaagc
cggcagccgctcgaagatgcgatcaaacgactcggcaagacatga
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