Methylobacterium currus: DA075_20100
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Entry
DA075_20100 CDS
T05184
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mee
Methylobacterium currus
Pathway
mee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DA075_20100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mee03400
]
DA075_20100 (mfd)
Enzymes [BR:
mee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DA075_20100 (mfd)
DNA repair and recombination proteins [BR:
mee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DA075_20100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AWB22923
UniProt:
A0A2R4WN02
LinkDB
All DBs
Position
1:complement(4327143..4330745)
Genome browser
AA seq
1200 aa
AA seq
DB search
MAKPAPKPPAPPAAPKKPPAARFALPKSAALTRAVEALKAGDSATLARVPDGFDALVVAD
LARALSQVAEGPAVLVHVARDGTRSAAFASALAFVAPEIEVMSVPAWDCQPYDRISPNPA
IAAQRMTALSRLARTRSSAEKPRILTTTVNALVQRVPPKSRIAVETFSAAPGNALDTDQI
VAWLEANGFLRTGTVRDTGEYAVRGGIIDLSPPGLANPVRLDFFGDTLESIRAFDPETQR
TIGQLRSLDLVPMSEVQLTTETIRRFRQGYVTTFGAATRDDRLYETISEGRRYAGLEHWM
PLFYDRLDTLFDYVAGVPLILDHQADDAVAERLSQVQEYYDARCEALKERQSGTAPYKPL
KADALYLSPNEWAKRIESATVARLAPFDVPEVAGRRLIDCEGAPGRSFAPERAQEGVNVF
DAAVSHVRDLQGAGHHVVLAAWSEGSRDRLCGVLTEHGLPKPKSITRLSDILAMKRGQDI
GVAVWGLEAGFSAGQLAVVAEGDILGDRLVRPKRKAKRPQDVILEVQALAPGDLVVHADH
GIGRFIGLKTVTAAGAPHDCLEIQYSGGLLLLPVENIELLTRYGSEDADVALDKLGGGAW
QARKAKLKRRIMEMAGALIKVAAERFLKSAPKMAPPEGTYGEFAARFPYEETEDQEAAIA
ATLGDLTSGRPMDRLVCGDVGFGKTEVALRAAFVTALSGKQVAVVVPTTLLARQHARTFE
ARFKGLPVNVAQASRFVGNADLKKVREGLADGSVDIVVGTHALLAKNITFKDLGLIIIDE
EQHFGVAHKERLKALKSEVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFV
MPFDPLSIREALLRERYRGGQAFYVVPRIEHLEEVKRFLDREVPEAKVAVAHGQMAAGQL
EDVMTAFYDGQYDILLATTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKARA
YALFTTPEGKTLTVQAERRLSVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHVKEV
GYELYQQMLESAVAALKSGNALPTDEQWSPTIALGAPVTMPEDYVADLSVRLGLYRRLAT
LENDQELESFGAELIDRFGPMPPEVEQLLKIVTIKILCRETNVEKVEAGPKGIVMHFRDR
SFANPAKLAGYIADQRSFAKVRPDMSVVFIRDLATVAERLKETTAILRDLVKLITKRKAA
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccgctcccaagccccccgccccgcccgcagctccgaaaaagcccccggcc
gcccgcttcgccctgccgaaatccgcggcgctgacccgggccgtggaggccctgaaggcc
ggcgacagcgcgacgctggcgcgcgtgccggacgggttcgacgcccttgtggtcgccgac
ctcgcccgggccctgtcgcaggtcgcggaaggcccggcggtgctggtccatgtcgcccgg
gacggcacccgctcggcggccttcgccagcgcgctggccttcgtggcgcccgagatcgag
gtgatgagcgtcccggcctgggactgccagccctacgaccggatctcgccgaacccggcc
atcgcggcgcagcgcatgacggcgctctcgcggctcgcgcgcacccgctcctcggccgag
aagccgcgcatcctcaccaccacggtcaacgccctggtgcagcgggtgccgccgaagtcg
cgcatcgccgtcgagactttttccgccgcgcccggcaacgccctcgacaccgaccagatc
gtcgcctggctcgaagccaacggcttcctgcgcaccggcaccgtgcgcgacaccggcgaa
tacgcggtgcgcggcggcatcatcgacctgtcgccgcccggcttggccaacccggtccgc
ctcgacttcttcggcgacaccctcgaatcgatccgcgccttcgaccccgagacccagcgc
acgattgggcaattgcggtccctcgacctcgtgccgatgagcgaggtgcagctcaccacc
gagacgatccggcgcttccgccagggctacgtcaccaccttcggcgcggcgacccgcgac
gaccggctctacgagacgatcagcgaggggcggcgctatgccggcctcgagcactggatg
ccgctgttctacgaccgtctcgacacgctgttcgattacgtcgccggcgtgccgctgatc
ctcgaccatcaggccgacgacgcggtggccgagcgcctgtcccaggtccaggaatattac
gacgcccgctgcgaggcgctgaaggagcgccagagcggcaccgcgccctacaagccgctt
aaagccgacgcgctctatctctcgccgaacgagtgggcgaaacgcatcgagagcgcgacg
gtcgcccgcctcgcccccttcgatgtgccggaggtcgctgggcgccggctgatcgactgc
gagggagcgcccggccgcagcttcgcgccggagcgggcgcaggagggcgtcaacgtcttc
gacgcggcggtgagccatgtccgcgacctgcaaggagccgggcaccacgtcgtcctggcg
gcatggtcggaggggtctcgcgaccgcctctgcggcgtcctgaccgagcacggcctgccg
aagccgaagagcatcacccggctctccgacatcctggcgatgaagcgcggccaggatatc
ggcgtcgcggtctgggggttggaggccgggttctccgccggccagctcgccgtggtggcg
gagggcgacatcctcggcgaccgcctggtgcggcccaagcgcaaggccaagcggccccag
gacgtgatcctggaggtgcaggcactggcgcccggcgacctcgtggtccatgccgatcac
ggcatcggccggttcatcgggctcaagaccgtgacggcggccggcgccccgcacgattgc
ctggagatccagtatagcggcggcctgctgctgctgccggtcgaaaatatcgagcttctg
acccgctacggctcggaggatgccgacgtcgccctcgacaagctcggcggcggggcctgg
caggcgcgcaaggccaagctcaagcgccggatcatggagatggccggcgccctcatcaag
gtcgcggccgagcgcttcctgaaatcggcgccgaagatggcgccgccggaagggacctac
ggcgagttcgccgcccgcttcccctacgaggagaccgaggaccaggaggcggcgatcgcc
gcgacgctgggcgacctcacctccggccggccgatggaccggctggtttgcggcgatgtc
ggcttcggcaagaccgaggtggctctgcgcgccgccttcgtcaccgcgctctcgggcaag
caggtggcggtggtggtgccgacgacgctcctggcgcgccagcacgcccgcaccttcgag
gcccggttcaagggcctgccggtcaacgtcgcccaggcctcgcgcttcgtcggcaatgcc
gacctgaagaaggtgcgcgaaggcctcgccgacggctcggtcgacatcgtggtcggcacc
cacgcgttgctcgcgaaaaatatcaccttcaaggatctcggcctcatcatcatcgacgag
gagcagcatttcggcgtcgcccacaaggagcggctgaaggcgctgaaatccgaggtgcac
gtgctcacgctctcggcgacgccgatcccgcgcacgctccagctcgccatgacgggggtg
cgcgagctctcgatcatcgccacgccgccggtcgatcgcctggcggtgcgcaccttcgtg
atgccgttcgatccgctctcgatccgcgaggcgctcctgcgcgagcgctatcgcggcggc
caggccttctacgtcgtgccgcgcatcgagcacctggaggaggtcaagcgcttcctcgac
cgcgaggtgcccgaggccaaggtggcggtggcccacggccagatggcggcgggccagctc
gaggacgtgatgacggccttctacgacggccagtacgacatcctgctcgccaccacgatc
gtcgaatcgggcctcgacatcccgaccgccaacacgctcatcgtccaccgcgccgacatg
ttcggcctcgcccagctctaccagctgcgcggccgcgtcggccgctccaaggcccgggcc
tacgcgctgttcaccacgccggagggcaagaccctgacggtgcaggcggagcgccgcctc
tccgtgctgcaatccctcgacacgctgggcgccggcttccagctcgccagccacgacctc
gacatccgcggcgccggcaacctgctcggcgacgagcagtccggccacgtcaaggaggtc
ggctacgagctctaccagcagatgctggagagcgcggtggcggcgctgaagtccggcaac
gccctgccgaccgacgagcaatggtcaccgaccatcgcgctgggcgccccggtcacgatg
ccggaggactacgtcgcggatctctcggtgcgcctcggcctctaccgccgcctcgcgacg
ctggagaacgaccaggagctggagagcttcggcgccgagctgatcgaccgcttcggcccg
atgccgccggaggtcgagcagctcctgaagatcgtgacgatcaagatcctgtgccgcgag
accaacgtcgagaaggtcgaggccggcccgaagggcatcgtcatgcacttccgcgatcgt
tccttcgccaacccggccaagctcgccggctacatcgccgaccagcgctccttcgccaag
gtgcggcccgacatgagcgtggtgttcatccgcgacctcgccacggtggccgagcggctg
aaggagacgacggcgatcctgcgcgatctggtgaagctgatcacgaagaggaaggcggcc
tga
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