Methanimicrococcus stummii: MmiEs2_09720
Help
Entry
MmiEs2_09720 CDS
T09451
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mees
Methanimicrococcus stummii
Pathway
mees03030
DNA replication
mees03410
Base excision repair
mees03420
Nucleotide excision repair
mees03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mees00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MmiEs2_09720 (lig)
03410 Base excision repair
MmiEs2_09720 (lig)
03420 Nucleotide excision repair
MmiEs2_09720 (lig)
03430 Mismatch repair
MmiEs2_09720 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mees03032
]
MmiEs2_09720 (lig)
03400 DNA repair and recombination proteins [BR:
mees03400
]
MmiEs2_09720 (lig)
Enzymes [BR:
mees01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MmiEs2_09720 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
MmiEs2_09720 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
MmiEs2_09720 (lig)
DNA replication proteins [BR:
mees03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
MmiEs2_09720 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
MmiEs2_09720 (lig)
DNA repair and recombination proteins [BR:
mees03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
MmiEs2_09720 (lig)
NER (nucleotide excision repair)
Other NER factors
MmiEs2_09720 (lig)
MMR (mismatch excision repair)
Other MMR factors
MmiEs2_09720 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WNY28769
UniProt:
A0AA96V8X9
LinkDB
All DBs
Position
1010204..1011922
Genome browser
AA seq
572 aa
AA seq
DB search
MTQFSEFTDLCIKIENIPGSLEMTDVFASFLKEVDDDELAVSCYMVMGEIFPAWTGKKLG
LGPNLLYAALSKAAGISLDKIKALLRETGDVGETTYRALCEDTKSQSTFSSFFEAEDTDE
NACGAKGKLSIREVYDRLKEIADASGKGAQSQKIKSLQYLFSESAPIEAKYISRIALEEL
RIGIGEGIVRDSIAKAFDVPVAQVEFAFMVTNDLGDVATVSKKGGAEALSHQHIQVDRPV
KMMLAQVTNSIEAAFAELDEAAVEWKFDGARLQIHKNGDDIQLFTRRLENVTNSLPDVVK
AVTDSVTAENAVLDGEAVAIDENGNPRPFQDILRRFRRKYDVETTSRDIPIHVNLFDLLY
ADGVSCIEKPLTERRQKLSEIVKPDAIGISVDTLTITKDPEVAAQIYQAALAAGHEGVMI
KNPSSPYSPGKRGKNWLKKKPVMDTLDLVVIGGEWGSGKRKNKIGSYVLACYDNIKNVYL
EIGRVGTGLSDELLDALTEQFADLIEAENGVTLKIKPEVVFEIAFEEIQKSPNNPAGYAL
RFPRLVRVRDDKTAEEIDTIEKIERMYQGQKE
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgacacaattttcagaattcaccgacctttgcataaaaattgaaaacattccgggatca
ttggaaatgacggatgttttcgcttcatttttaaaagaagtcgatgacgacgaacttgcc
gtttcctgttacatggtgatgggcgagattttcccggcgtggaccggcaaaaaactcggt
ctcggtccgaatctcctttatgcggcactttcaaaagcagccggaatatcacttgataaa
atcaaagcgcttcttcgcgaaaccggtgatgtcggcgaaacaacataccgcgcgctttgt
gaagatacgaaaagccaatcaactttttcaagcttttttgaagcggaagacaccgatgaa
aacgcttgcggcgccaaaggaaaactttccattcgcgaagtatacgaccgtttaaaagaa
attgccgatgcttccggaaaaggcgcgcagtctcaaaaaatcaaaagccttcaatatctt
ttttcggaatcagcgccgatagaagcaaaatatatttcaagaattgcgcttgaagaactt
cgtatcggaatcggggaaggcattgtcagagattcgattgccaaagcgtttgatgttccc
gtcgcgcaagtggaattcgcgttcatggtcaccaatgatttgggtgatgttgcgaccgtt
tccaagaaaggcggtgcggaagcgctttctcaccagcacattcaagtggaccgtcccgtc
aagatgatgctcgcgcaggtgacaaacagcatcgaggcggcgtttgccgagctggacgaa
gcggctgtcgaatggaaatttgacggcgcgcggcttcaaattcataaaaacggcgatgat
attcaattatttacgcgccggctggaaaatgtgacgaactcgctccctgatgttgtcaaa
gcagtaacggattcggtaactgccgaaaatgccgttttagacggcgaagctgtcgcgatt
gatgaaaacggaaatccgcggccgtttcaggacattttgcgccgtttccgacgcaaatac
gatgttgaaacgacgtcaagagacatcccgattcacgtgaatttatttgatttgctttat
gccgacggtgtcagctgcattgaaaaaccgctgacggaaagacgacaaaaattatctgaa
atcgtcaaacccgatgcgatcggaatcagcgttgacactttaacgattacaaaagatccc
gaagttgccgcgcaaatttatcaggcggcgcttgctgccggtcatgaaggcgttatgatt
aaaaatccgagttcgccgtactcgccgggcaagcgcggtaaaaattggctgaagaaaaaa
ccggtgatggacacgcttgatttggttgtcatcggcggcgaatggggttcgggaaaacgc
aaaaacaaaatcggctcatatgttttggcgtgttatgacaatattaaaaacgtttatttg
gagatcgggcgcgtcggaaccggtctcagtgacgagcttttggacgcgctgacggaacaa
ttcgcggatttgattgaagccgaaaacggcgtgacgctgaaaataaaacccgaagtcgtt
tttgaaatcgcttttgaagaaatccaaaaaagcccgaacaatccggccggatacgcgctc
agattcccgcgtttggttcgcgtcagagacgataaaaccgctgaagaaatcgacacgatt
gaaaagattgagcggatgtatcagggacaaaaagaataa
DBGET
integrated database retrieval system
