Methylotenera versatilis: M301_1675
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Entry
M301_1675 CDS
T01247
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meh
Methylotenera versatilis
Pathway
meh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M301_1675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meh03400
]
M301_1675
Enzymes [BR:
meh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M301_1675
DNA repair and recombination proteins [BR:
meh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M301_1675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
HemY_N
BRO1
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADI30055
UniProt:
D7DJ20
LinkDB
All DBs
Position
1881826..1885254
Genome browser
AA seq
1142 aa
AA seq
DB search
MSQTSLLVPKSGQSNRVELSTNGEDGLALAELALKIKSASPTKPLVIITANAFDAQRLLE
EIPYFAPSLTVNLLPDWETLPYDQFSPHPDLISDRLTTLYQISQNSCDVIIVPLSTALIR
LSPKAYLSANTFMLKKGQILDTEALRRQCAEAGYHHVSQVISHGEFSVRGGLVDLFPMGS
ALPYRIDLFDNEIETIRTFDVDTQRSLYPVPEIRLLPAREFPLDEAGVALFRGQFREAFE
GDPQRAKIYKDVSKGIASGGIEWYLPLFFEQTATFLDYLPTDCVLCLHGDLDQSAQQFWR
EAQSRYRTLAHDAERPLLTPETLLIKTEDFFSTSHQFTRISLNTNSKTTGLPALDIERRA
EKPLHKLQSYISDFSGRILIAAESLGRRETISQLFAEHGIQPALIETWAEFVDSKEKVML
GVSPLHHGFCLENKTISKSIAVITEAELYAATVRQQRRREKEKARSTEGMLKDLSELRMD
DPVVHEQHGVGRYKGLVNIDFGEGETELLLLEYFGDDKLYVPVSQLFLISRYSGGPPESA
PLHRLGSGNWEKAKKKALKQIRDTAAELLNLYAQRASRRGHAFTLSLHDYETFCEGFPFE
ETPDQLEAIENVIKDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTL
LAEQHFNNFKDRFAEWPIKIAEISRFRTAKEQKEALAGLEAGQIDIIIGTHRLIQKDVKF
KNLGLVVLDEEHRFGVRQKEQLKALRAEVDILTLTATPIPRTLSMAMEGLREFSIITTPP
QKRLSIKTFHTDYSEGIIREAVMREFKRGGQVYFLHNEVDTIHSMREKLERIVPDARIAV
AHGQLRERELEHVMRDFYNQRYNLLLCTTIIETGIDVPTANTIILNKADMFGLAQMHQLR
GRVGRSHHQAYAYLLTDPDRKITVQAQKRLDAIQLMEDLGAGFHLAMHDLEIRGAGELLG
DSQSGEMQEIGFHLYSDMLNHAVKQLKAGKEPDLNAPLGVTTEINLHTPALLPTKYCPDV
HERLVIYKRLANCVNDDDLDNMQEELIDRFGLLPEQGEALIACHRLRIAAKAIGIIKIDA
SSETIQLQFNPKADIDPTKLIALLQRDRRCRMNGPDKLRVTIGLEDLQLRADFVKTLLKE
FI
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagacttcactgctagttccaaaatcaggtcaatctaaccgtgttgagctttca
accaatggcgaagatgggctagctttagctgagttagcgcttaaaattaaaagtgcctcg
cctacaaaaccattagtgattattaccgcgaatgcctttgatgcgcagcggttgcttgaa
gaaattccatactttgcgccctccctcacggttaatttattacctgattgggaaacactg
ccctacgatcaattttcaccacatcctgacttaatttcagatcgactcaccacgctttac
caaatcagccaaaattcatgtgatgtgattattgtgccgctatcaactgccttgattcgc
ttaagccctaaggcatatttaagtgcgaatacctttatgctcaaaaaagggcagatactg
gatactgaagcgctgcgacgccaatgtgctgaagctggttatcaccatgtgagtcaagtg
atttcgcatggtgaatttagtgtacgtggcggcctagttgatttatttcctatgggttca
gcgctaccttaccgtattgatttatttgataacgaaattgaaaccatacgcacatttgat
gtagacacacagcgcagcctttaccctgtaccggaaattcgactgttacctgcgcgtgag
tttccgctagatgaagcaggtgtcgcgctatttcgtggtcagtttagagaagcatttgaa
ggcgacccacaacgcgcaaaaatctataaagatgtcagcaaaggcatagcttctggcggt
attgaatggtatttaccgttgtttttcgaacaaacagcgaccttcctcgactatctgcct
accgattgcgtcctttgcttgcatggtgatttagaccaaagtgcgcaacagttttggcgc
gaggcgcaatctcgttaccgcacactggcgcatgatgcggaacgtccattattaacacct
gaaacactactgattaaaacagaagatttctttagcacctcgcatcaatttacacgtatt
tcattaaacacaaacagtaagacaactggcttaccagcgttagatattgagcgccgagct
gaaaagcctttgcataaactacaaagctatatcagtgatttttctggtcgcattttaatt
gctgcagaaagcctaggtcgcagagaaaccatttcacagctatttgctgaacatggcata
caaccagccttgattgagacttgggcagagttcgtcgattctaaagaaaaagtaatgcta
ggcgtgtcaccgttgcatcatggtttttgtttagaaaacaaaaccatcagcaaatcaatc
gccgtgattacagaagctgaactttacgccgccacagttcgccagcaacgccgtagagaa
aaagaaaaagcccgcagtacagaaggcatgctcaaagatttatctgagctacgcatggac
gaccctgtggtacatgaacaacatggtgtgggacgttacaaaggcttagtgaatatagat
ttcggcgaaggcgaaactgagcttttgctattggaatatttcggcgacgataaactttac
gtgccagtttcacagctattcttaatctcacgttattctggcggaccgcctgagtccgcc
ccgttgcaccgtttaggtagtggtaattgggaaaaagccaagaaaaaagcactcaaacaa
attcgtgatactgctgctgaactgcttaatctatacgcacaacgcgcatcacgtcgtggt
catgcgtttaccttgagcttgcacgattatgaaactttttgtgaaggctttccgtttgaa
gaaacaccagaccaattagaagccattgaaaacgtcatcaaagatatgcaatctggccgt
ccaatggataggttagtctgtggcgatgtaggctttggtaaaactgaagttgcactacgc
gccgcttttgtagcggtgatgggtggcaggcaagttgccgtgcttgtaccaaccacacta
ttagccgaacaacactttaacaactttaaagatcgtttcgctgaatggccgattaaaatt
gctgaaatctcgcgctttagaactgccaaagagcaaaaagaagcattggctggcttagag
gcagggcaaatcgacatcattatcggtacgcatcgcttgattcaaaaagatgtaaaattt
aagaatttagggctagtggtattagatgaagagcaccgctttggtgttcgacaaaaagag
cagttaaaagctctacgtgccgaggttgatatactcacgctaacagccacgccaattcca
cgcacgctaagtatggcgatggaaggcttgcgcgaattttcaattatcacaacgccgccg
caaaaacgtttgagcatcaaaacattccataccgattattctgaaggcatcattcgcgaa
gccgtcatgcgtgaatttaagcgtggtggtcaggtttatttcttacataatgaagtggat
actatccactccatgcgcgaaaagcttgaacgcattgtgcctgatgcccgcattgcggtg
gcgcacggccagttacgtgagcgcgagctagaacatgtcatgcgagatttttataatcag
cgttacaacttattgctatgcactaccattattgaaactggtattgatgtaccaacagcc
aataccatcattttgaacaaagccgatatgtttggtttagcgcaaatgcaccagttacgt
ggccgcgtgggtcgctcgcatcaccaagcatatgcttacttgctcacagacccagatcgt
aaaattaccgtacaggcgcaaaagcgcttagatgcgattcaactgatggaagatctaggt
gcaggctttcatcttgcgatgcacgatttagaaattcgcggtgcaggtgagttattaggc
gacagccaaagtggtgaaatgcaagaaatcggctttcatttgtattctgacatgctcaac
catgcagtgaagcaactcaaagcaggtaaagagcctgacttaaatgcaccgcttggcgtc
acaactgaaatcaatttacatacgccagcgctgctacccaccaaatattgccctgatgtg
catgagcgcttggtcatttataaacgcctagctaactgcgtcaatgacgatgatttagac
aatatgcaagaagagctgatcgaccgctttggcttgctgccagagcaaggcgaagcactc
attgcctgccacagattacgtattgccgctaaagcgattggcatcattaaaattgacgcc
agttctgaaactattcagctacaatttaaccccaaagcagacattgacccaaccaagttg
attgccttattacagcgtgaccgccgttgtcgcatgaatggtcccgataagttaagagta
acgataggcttagaagacctccaactaagagctgactttgtgaaaacgttgttaaaagaa
tttatttaa
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