Methylomarinovum tepidoasis: MIN45_P0008
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Entry
MIN45_P0008 CDS
T09124
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meiy
Methylomarinovum tepidoasis
Pathway
meiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIN45_P0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meiy03019
]
MIN45_P0008
03009 Ribosome biogenesis [BR:
meiy03009
]
MIN45_P0008
Enzymes [BR:
meiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MIN45_P0008
Messenger RNA biogenesis [BR:
meiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MIN45_P0008
Ribosome biogenesis [BR:
meiy03009
]
Prokaryotic type
rRNA helicases
MIN45_P0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
HEM4
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BCX87641
LinkDB
All DBs
Position
complement(8251..9885)
Genome browser
AA seq
544 aa
AA seq
DB search
MSEISTFASFDLPEAVLSAVRQAGYESPTPIQAATIPHVLEGRDVIAQAQTGTGKTAAFA
LPLLARIDIDDPRPQVLVLTPTRELALQVAEAFQTYAANLPELHVLPIYGGQEYGRQLRA
LRRGVHVVVGTPGRIMDHMRRGTLDLSSLHTLVLDEADEMLRMGFVDDVDWILEQTPAER
QVALFSATMPAPIRRIAQRHLRDPEEIKIQVKAATADTVRQRYCLLSPHAKLDALTRILE
AEDFEAVILFVRTKTATVELAEKLAARGYAVAPLNGDIPQNQRQRTVEQLKSGRLDVIVA
TDVAARGLDVQRITHVINYDVPLDTESYVHRIGRTGRAGRSGDAILFVTPREKRLLRAIE
RATRKAIEPMELPTAETINSQRMAKFQQRISDTLANQDVGFFRELLQQYEQEHNVPALDI
AAALATLLQGDEPLLLDEKALRAGPNRERRPANGERMTLKRRSRRDAVEMASYRIEVGRN
HGVRPGNIMGAIANEVGLDSRFIGRIDIHDDFSTVDLPDGMPQEVLRTLKKVWVAGRPLN
ISKA
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagatttccactttcgcctccttcgatctgcctgaagccgtcctttccgcggtg
cgccaggccggttacgaatcccccacgccgatccaggccgccaccatcccccacgtactc
gaaggccgcgacgtcatcgcccaggctcagaccggcaccggcaagaccgccgccttcgcc
ctgccgctgctggcccgcatcgacatcgacgacccccgcccgcaggtgctggtgctgacg
ccgacccgtgagctggccctgcaggtggccgaagccttccagacctatgccgccaatctg
ccggagctgcacgtgctgccgatctacggcggtcaggaatacggccgccagctgcgtgct
ctgcgccgcggggtccatgtggtggtcggcaccccggggcggatcatggaccacatgcgc
cgcggcaccctcgatctgtcctccctccacaccctggtgctggacgaggccgacgaaatg
ctgcgcatgggcttcgtcgacgacgtggactggatcctagagcagaccccggccgagcgt
caggtggccctgttttccgccaccatgccggcgccgatccggcgcatcgcccagcgtcac
ctgcgcgacccggaggaaatcaagatccaggtcaaggccgccaccgccgacaccgtacgc
cagcgctactgcctgctcagcccccacgccaagctcgacgccctgacccggatcctcgaa
gccgaggatttcgaagccgtgatcctgttcgtgcgcaccaagaccgccacagtggagctg
gcagagaaactggccgcccgcggctacgccgtcgcccccctcaacggggacattccccag
aaccagcgccagcgcaccgtcgagcagctcaaaagcggccgtctcgacgtcatcgtcgcc
accgacgtggctgctcgcgggctggacgtgcagcgcatcacccacgtgatcaactacgat
gtccccctcgataccgagtcctacgtccatcgcatcggccgcaccggccgcgccggccgc
agcggggacgcgatcctgttcgtcaccccgcgggaaaagcgcctgctgcgggccatcgaa
cgggcgacccggaaagcgatcgagcccatggagcttcccactgcggaaaccatcaacagc
cagcgcatggccaaattccagcagcgcatcagcgataccctggccaaccaggatgtcggt
ttcttccgggaactgctgcagcaatacgaacaggagcacaacgtccccgccctcgacatc
gccgccgcgctggcgaccctgctgcagggagacgagccgctgctgctggacgaaaaggcg
ctgcgggccgggccgaaccgggaacgccggccggcgaacggggagcgcatgactctgaag
cgccgcagtcgcagggatgcggtggaaatggccagttaccggatcgaggtaggtcgcaac
cacggcgtccgtcctggcaacatcatgggtgcgatcgccaacgaggtcggcctggacagc
cgcttcatcggtcgcatcgacatccacgacgatttcagcaccgtggaccttcccgacggc
atgccgcaggaagtgctgcgcaccctgaagaaagtgtgggtcgccggccgtccgctgaac
atttccaaagcctag
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