Methylophaga nitratireducenticrescens: Q7A_343
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Entry
Q7A_343 CDS
T02055
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mej
Methylophaga nitratireducenticrescens
Pathway
mej02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mej00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q7A_343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mej03021
]
Q7A_343
Transcription machinery [BR:
mej03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q7A_343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GAS
Motif
Other DBs
NCBI-ProteinID:
AFI83201
UniProt:
I1XFN2
LinkDB
All DBs
Position
347848..349686
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AA seq
612 aa
AA seq
DB search
MKDQQSRVKELIALGKERGYLTYGEINDHLPEDLVDADQVEDIVSMFSDLGIMVHEDGMD
TDEMERLAEAVSSNDEVSDEEAAAVLASSDGEFGRTTDPVRMYMREMGSVELLTREGEIV
IAKRIEAGLRESLLMLSTYPPVISSFLEFYDAVEAGEMRLNELIRGFVAPEELVASDDDD
DDVTSSSDSDDSDSDDDDDDDVDGVSDDEDDSGEIDPEEARARFTALKEAYKNVLATEGD
AMIESREQASNLFMEFKLTPKTLLYLNGLMAETIAEVRKQEKIIMDIVVEQAGMNRRDFI
DAFQGNESNLEWSDKFIRAKKHYSSTIKKNLDDILAAQSKLAEIAEDRGLDISEIKEISR
QMSIAEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVARQMLQEMGREPTPDEL
AERVEMPEDKVRKVLKISKEPISMETPIGDDEDSHLGDFVEDINVMSPADSAIIEGLREA
TQGVLNGLTEREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR
SDQLRSFLDSDS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatcagcaatcacgcgttaaagaacttatcgcccttggaaaggagcgcggttat
ctcacctacggcgagatcaatgaccaccttccagaagatttggtcgatgcggatcaggtc
gaagatatcgtcagtatgttcagcgacctgggtatcatggtccatgaagatggcatggat
accgatgagatggaacgtcttgccgaagctgtctcatcaaatgacgaagtctctgatgaa
gaagctgcagctgtcctggcaagttccgatggtgagtttggtcgtacaacggatcctgtg
cgtatgtacatgcgcgagatgggctctgttgaattattgactcgcgaaggcgagatcgtt
atcgccaaacgcatcgaagctggccttcgtgaaagtctgctgatgctgtcaacttaccca
ccggttatttcgtcattccttgaattctacgatgctgttgaagcaggcgaaatgcgcctg
aatgaactgattcgtggttttgtcgcacctgaagagctggtcgcaagtgatgacgacgat
gatgatgttaccagcagctctgactctgatgattctgacagcgacgacgatgatgacgat
gatgttgatggcgtaagcgatgatgaagatgattctggtgaaattgatccagaagaagcc
cgcgctcgctttaccgcattgaaagaagcttacaaaaacgttctggccaccgaaggtgat
gccatgatcgaatctcgtgaacaggccagtaacctgtttatggaattcaaactgacccca
aaaacgctgctttatttaaatggcttgatggcagaaaccatcgccgaagtgcgtaaacaa
gaaaaaatcattatggacatcgttgtagagcaggcgggtatgaatcgccgtgactttatc
gatgcattccagggcaatgaaagtaatcttgagtggtcagataaattcattcgcgctaaa
aaacattattcctccaccatcaagaaaaatcttgatgacattctggccgcacaaagcaaa
ttagcggaaattgcagaagatcgtggactggatatttccgagattaaagaaatcagccgt
cagatgtcgattgctgaagccaaagcacgtcgtgccaagaaagaaatggtcgaagctaac
ttgcgtctggttatttcaattgccaaaaaatacaccaaccggggtctgcagttcctggat
ctgattcaggaaggcaacattggtctgatgaaagcggttgataagtttgaatatcaacgt
ggttataaattctctacctatgcaacatggtggattcgtcaggcgattacccgttcgatt
gccgatcaggcacgtaccattcgtattccggtacacatgattgaaaccatcaacaaactc
aatcgtgttgcccgtcaaatgctgcaggaaatggggcgtgaaccgactccggatgaattg
gcagaacgcgtagaaatgccggaagacaaagtacgtaaagtactgaagatttccaaagaa
ccgatctcgatggaaacaccaatcggtgatgatgaagattcacatctgggcgatttcgtt
gaagatatcaacgttatgtcaccagcagactcggcaatcatcgaaggcctcagagaagcc
actcagggtgttctgaacggtctcaccgaacgagaagccaaagtattgcgtatgcgtttt
ggtattgatatgaataccgaccacacactggaagaagtcggtaaacaatttgatgttacc
cgtgagcgtattcgtcagatcgaagccaaggctttacgtaaactgcgtcacccatcacgc
tcggatcaactgagaagcttcctcgactcagacagctga
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